BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_O12 (681 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 53 4e-08 SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 29 0.62 SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 1.9 SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 4.4 SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.8 >SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual Length = 1279 Score = 52.8 bits (121), Expect = 4e-08 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 14/132 (10%) Frame = +1 Query: 1 DFGVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRL 180 D GVQIN+ ++ I IQG ++ + I + + L + V+I HR+L Sbjct: 758 DLGVQINV------EEGHIRIQGIKKNVEETAARIKSQIEALIDDTILRVNIPNDFHRQL 811 Query: 181 IGLRGKNIRRIMDEFKVDIRFPKHGDDS--------------VVVITGDEDNVLDAKDHL 318 IG GK +RR+ ++F V +RFP+ D S VVI G + +V AK L Sbjct: 812 IGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEVVIRGGKKSVAAAKQEL 871 Query: 319 LNLAEEYLQDVA 354 L L EY + +A Sbjct: 872 LEL-YEYEKSIA 882 Score = 51.6 bits (118), Expect = 1e-07 Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 6/95 (6%) Frame = +1 Query: 10 VQINLPKRGEPDDD-----IITIQGYEEKAL-QAKDAIMAIVHQLDNQCKEEVDIDPRVH 171 VQ +LPKR E + II I G ++A+ + + ++A+V+Q +V IDP + Sbjct: 516 VQYHLPKREELQSNSNKTVIIEISGKSQEAVREGRAKLLALVNQFPESKFYKVTIDPLLQ 575 Query: 172 RRLIGLRGKNIRRIMDEFKVDIRFPKHGDDSVVVI 276 R +IG +GKN++++ +E +V++ ++G++ VI Sbjct: 576 RYVIGSKGKNLQKLRNEHQVELLVGEYGEEDPDVI 610 Score = 48.4 bits (110), Expect = 9e-07 Identities = 26/92 (28%), Positives = 46/92 (50%) Frame = +1 Query: 61 IQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIR 240 ++G++E +A ++ + Q+ C + I +HRR+IG G I +I +V I Sbjct: 1183 VRGHKENVEKAIASLEKSIKQVMENCIAYLGIPTNLHRRIIGSGGSIINKIRKIAQVKID 1242 Query: 241 FPKHGDDSVVVITGDEDNVLDAKDHLLNLAEE 336 P+ D +VV+ G V+ AKD + +E Sbjct: 1243 VPRTPGDEIVVVQGSRAGVVKAKDLIFERLQE 1274 Score = 38.3 bits (85), Expect = 0.001 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 12/135 (8%) Frame = +1 Query: 4 FGVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLI 183 F V+I++ + ++++G + A I AI ++ N ++ + ID HR LI Sbjct: 912 FDVKIDIGDVSTEETTPVSVRGAKADVENAIKEISAIAEEVKNLVEKVIKIDREYHRYLI 971 Query: 184 GLRGKNIRRIMDEF-----KVD----IRFPKHGDD---SVVVITGDEDNVLDAKDHLLNL 327 G G ++ + E K + I F + + VV+ GD++ V + LL + Sbjct: 972 GPNGSKLQNTIKECGGSTDKTETARLISFSNGNSEEERNSVVLRGDKEIVEALETRLLEI 1031 Query: 328 AEEYLQDVADRYQAP 372 EE V ++ + P Sbjct: 1032 VEELKNQVEEKIEVP 1046 Score = 33.1 bits (72), Expect = 0.038 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%) Frame = +1 Query: 31 RGEPDDDIITIQGYEEKALQAKDAIMAIV-----HQLDNQCKEEVDIDPRVHRRLIGLRG 195 R + DD + I+G+ + + I +V H++ + EE D + + +IG G Sbjct: 690 RPDSTDDDVYIRGFSKDVERVVSEIKQVVRDAKNHEILHSHVEEFDFPAQYSKNVIGKNG 749 Query: 196 KNIRRIMDEFKVDIRFPKHGDDSVVVITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAP 372 N+ + ++ V I ++ + I G + NV + + + E + D R P Sbjct: 750 SNVSSLREDLGVQINV----EEGHIRIQGIKKNVEETAARIKSQIEALIDDTILRVNIP 804 Score = 29.5 bits (63), Expect = 0.47 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +1 Query: 10 VQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQ 135 V+I++P+ P D+I+ +QG ++AKD I + + NQ Sbjct: 1239 VKIDVPRT--PGDEIVVVQGSRAGVVKAKDLIFERLQENQNQ 1278 Score = 29.1 bits (62), Expect = 0.62 Identities = 28/131 (21%), Positives = 51/131 (38%) Frame = +1 Query: 13 QINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLR 192 +IN+ + + IQG A+ I+ ++ + + + + V +IG Sbjct: 187 RINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRETKT---MPCPVFVVGAIIGTN 243 Query: 193 GKNIRRIMDEFKVDIRFPKHGDDSVVVITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAP 372 G+N++ IMD I+ PK + +D K+ N A L D+ +Y+ Sbjct: 244 GQNLKSIMDRTSTRIQIPKRNN---TANESSDDAKKPEKEE--NSAASTLDDLEPQYEMT 298 Query: 373 AAPSLADFGSV 405 DF V Sbjct: 299 TITIEGDFEGV 309 >SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 798 Score = 29.1 bits (62), Expect = 0.62 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 157 DPRVHRRLIGLRGKNIRRIM-DEFKVDIRF 243 DP V R +I LRG NI +M +F +DI F Sbjct: 410 DPSVCRSIIALRGYNIFGLMLKKFSIDIEF 439 >SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 663 Score = 27.5 bits (58), Expect = 1.9 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +1 Query: 154 IDPRVHRRLIGLRGKNIRRIMDEFKVDIRF 243 + +H++LIG RG+ I+R+ + I F Sbjct: 585 VPEEIHKKLIGFRGEQIQRVTKLYNSYIEF 614 >SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 715 Score = 26.2 bits (55), Expect = 4.4 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +1 Query: 199 NIRRIMDEFKVDIRFPKHGDDSVVVITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAPAA 378 N + D FK + F K D + +++ KD+ +L EY D++ Q A Sbjct: 354 NFEKYCDNFKKNY-FSKFKDSEITEDIVEKEYWKLVKDNNTSLEVEYGADLSTLDQGSAF 412 Query: 379 PSLA 390 PSLA Sbjct: 413 PSLA 416 >SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1201 Score = 25.8 bits (54), Expect = 5.8 Identities = 11/40 (27%), Positives = 18/40 (45%) Frame = -1 Query: 546 HGRELVCGSRVRCTLLPRTPFHHKTSNSRRSGIRVRSTAA 427 HG+ L + + T RT HK N + + ++ T A Sbjct: 1104 HGQSLTHNNLIAVTPPSRTGVEHKEENKKYDNVNIQKTLA 1143 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,476,866 Number of Sequences: 5004 Number of extensions: 46586 Number of successful extensions: 122 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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