Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O12
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 53 4e-08
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 29 0.62
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 1.9
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 4.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.8
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 52.8 bits (121), Expect = 4e-08
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Frame = +1
Query: 1 DFGVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRL 180
D GVQIN+ ++ I IQG ++ + I + + L + V+I HR+L
Sbjct: 758 DLGVQINV------EEGHIRIQGIKKNVEETAARIKSQIEALIDDTILRVNIPNDFHRQL 811
Query: 181 IGLRGKNIRRIMDEFKVDIRFPKHGDDS--------------VVVITGDEDNVLDAKDHL 318
IG GK +RR+ ++F V +RFP+ D S VVI G + +V AK L
Sbjct: 812 IGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEVVIRGGKKSVAAAKQEL 871
Query: 319 LNLAEEYLQDVA 354
L L EY + +A
Sbjct: 872 LEL-YEYEKSIA 882
Score = 51.6 bits (118), Expect = 1e-07
Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Frame = +1
Query: 10 VQINLPKRGEPDDD-----IITIQGYEEKAL-QAKDAIMAIVHQLDNQCKEEVDIDPRVH 171
VQ +LPKR E + II I G ++A+ + + ++A+V+Q +V IDP +
Sbjct: 516 VQYHLPKREELQSNSNKTVIIEISGKSQEAVREGRAKLLALVNQFPESKFYKVTIDPLLQ 575
Query: 172 RRLIGLRGKNIRRIMDEFKVDIRFPKHGDDSVVVI 276
R +IG +GKN++++ +E +V++ ++G++ VI
Sbjct: 576 RYVIGSKGKNLQKLRNEHQVELLVGEYGEEDPDVI 610
Score = 48.4 bits (110), Expect = 9e-07
Identities = 26/92 (28%), Positives = 46/92 (50%)
Frame = +1
Query: 61 IQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLRGKNIRRIMDEFKVDIR 240
++G++E +A ++ + Q+ C + I +HRR+IG G I +I +V I
Sbjct: 1183 VRGHKENVEKAIASLEKSIKQVMENCIAYLGIPTNLHRRIIGSGGSIINKIRKIAQVKID 1242
Query: 241 FPKHGDDSVVVITGDEDNVLDAKDHLLNLAEE 336
P+ D +VV+ G V+ AKD + +E
Sbjct: 1243 VPRTPGDEIVVVQGSRAGVVKAKDLIFERLQE 1274
Score = 38.3 bits (85), Expect = 0.001
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Frame = +1
Query: 4 FGVQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLI 183
F V+I++ + ++++G + A I AI ++ N ++ + ID HR LI
Sbjct: 912 FDVKIDIGDVSTEETTPVSVRGAKADVENAIKEISAIAEEVKNLVEKVIKIDREYHRYLI 971
Query: 184 GLRGKNIRRIMDEF-----KVD----IRFPKHGDD---SVVVITGDEDNVLDAKDHLLNL 327
G G ++ + E K + I F + + VV+ GD++ V + LL +
Sbjct: 972 GPNGSKLQNTIKECGGSTDKTETARLISFSNGNSEEERNSVVLRGDKEIVEALETRLLEI 1031
Query: 328 AEEYLQDVADRYQAP 372
EE V ++ + P
Sbjct: 1032 VEELKNQVEEKIEVP 1046
Score = 33.1 bits (72), Expect = 0.038
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Frame = +1
Query: 31 RGEPDDDIITIQGYEEKALQAKDAIMAIV-----HQLDNQCKEEVDIDPRVHRRLIGLRG 195
R + DD + I+G+ + + I +V H++ + EE D + + +IG G
Sbjct: 690 RPDSTDDDVYIRGFSKDVERVVSEIKQVVRDAKNHEILHSHVEEFDFPAQYSKNVIGKNG 749
Query: 196 KNIRRIMDEFKVDIRFPKHGDDSVVVITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAP 372
N+ + ++ V I ++ + I G + NV + + + E + D R P
Sbjct: 750 SNVSSLREDLGVQINV----EEGHIRIQGIKKNVEETAARIKSQIEALIDDTILRVNIP 804
Score = 29.5 bits (63), Expect = 0.47
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 10 VQINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQ 135
V+I++P+ P D+I+ +QG ++AKD I + + NQ
Sbjct: 1239 VKIDVPRT--PGDEIVVVQGSRAGVVKAKDLIFERLQENQNQ 1278
Score = 29.1 bits (62), Expect = 0.62
Identities = 28/131 (21%), Positives = 51/131 (38%)
Frame = +1
Query: 13 QINLPKRGEPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLR 192
+IN+ + + IQG A+ I+ ++ + + + + V +IG
Sbjct: 187 RINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRETKT---MPCPVFVVGAIIGTN 243
Query: 193 GKNIRRIMDEFKVDIRFPKHGDDSVVVITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAP 372
G+N++ IMD I+ PK + +D K+ N A L D+ +Y+
Sbjct: 244 GQNLKSIMDRTSTRIQIPKRNN---TANESSDDAKKPEKEE--NSAASTLDDLEPQYEMT 298
Query: 373 AAPSLADFGSV 405
DF V
Sbjct: 299 TITIEGDFEGV 309
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 29.1 bits (62), Expect = 0.62
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 157 DPRVHRRLIGLRGKNIRRIM-DEFKVDIRF 243
DP V R +I LRG NI +M +F +DI F
Sbjct: 410 DPSVCRSIIALRGYNIFGLMLKKFSIDIEF 439
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 154 IDPRVHRRLIGLRGKNIRRIMDEFKVDIRF 243
+ +H++LIG RG+ I+R+ + I F
Sbjct: 585 VPEEIHKKLIGFRGEQIQRVTKLYNSYIEF 614
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 199 NIRRIMDEFKVDIRFPKHGDDSVVVITGDEDNVLDAKDHLLNLAEEYLQDVADRYQAPAA 378
N + D FK + F K D + +++ KD+ +L EY D++ Q A
Sbjct: 354 NFEKYCDNFKKNY-FSKFKDSEITEDIVEKEYWKLVKDNNTSLEVEYGADLSTLDQGSAF 412
Query: 379 PSLA 390
PSLA
Sbjct: 413 PSLA 416
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -1
Query: 546 HGRELVCGSRVRCTLLPRTPFHHKTSNSRRSGIRVRSTAA 427
HG+ L + + T RT HK N + + ++ T A
Sbjct: 1104 HGQSLTHNNLIAVTPPSRTGVEHKEENKKYDNVNIQKTLA 1143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,866
Number of Sequences: 5004
Number of extensions: 46586
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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