Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O12
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0288 + 16527666-16527837,16527915-16528132,16528491-165285...    35   0.052
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648...    30   2.0  
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792...    29   4.5  
05_04_0125 - 18241542-18242129                                         28   7.9  

>10_08_0288 +
           16527666-16527837,16527915-16528132,16528491-16528554,
           16528749-16528821,16529294-16529371,16529573-16529730,
           16530222-16530390,16530531-16530990,16531098-16531478,
           16531834-16532037,16532318-16532451,16532937-16533120
          Length = 764

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +1

Query: 37  EPDDDIITIQGYEEKALQAKDAIMAIVHQLDNQCKEEVDIDPRVHRRLIGLR-GKNIRRI 213
           E DDD  T +G EE  +  +DA+    +Q  ++ K++    P+ H ++IG++  K++ + 
Sbjct: 521 EDDDDDDTTKG-EEDEIDEEDAVEQTENQAGDETKDKPSKGPKQHLQMIGVQLLKDLEKT 579

Query: 214 MDEFKVDIRFPKHGDD 261
               K   R P+  DD
Sbjct: 580 SVSSKKSKRVPEIDDD 595


>10_02_0189 -
           6486737-6486916,6486988-6487260,6487364-6487576,
           6489081-6489206
          Length = 263

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 501 LPRTPFHHKTSNSRRSGIRVRSTAAGTRVFVQNTTEVSERRRGWRLVTIGYVL 343
           LPR  F H  + +R + + VR  AAG  V   +T   +   R    +  GY L
Sbjct: 12  LPRESFRHTQTRTREAAVHVRGGAAGWFVCEISTISFTPAIRSQDAIGCGYNL 64


>09_04_0272 -
           16278136-16278289,16278873-16278970,16279090-16279230,
           16279701-16279865,16279941-16280117,16280330-16280510,
           16280784-16280829,16281178-16281241,16281331-16281353,
           16281964-16282036,16282410-16282541,16283343-16283429,
           16283488-16283700
          Length = 517

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -1

Query: 369 RLVTI--GYVLQVFLGQVQEVILSIEHVVFITRDHHNAIITMFRETYVHLEL 220
           RLV++  G +L   +G+VQE+I   ++ V ++R  + +II   R  ++ +E+
Sbjct: 126 RLVSLEMGKILPEGIGEVQEIIDMCDYAVGLSRQLNGSIIPSERPNHMMMEV 177


>05_04_0125 - 18241542-18242129
          Length = 195

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +1

Query: 139 KEEVDIDPRVHRRLIGLRGK 198
           KE VD DP+V  RLIGL G+
Sbjct: 13  KEVVDGDPQVPSRLIGLHGE 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,929,983
Number of Sequences: 37544
Number of extensions: 337549
Number of successful extensions: 944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)