Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O12
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68790.1 68414.m07863 expressed protein                             31   0.93 
At3g06820.1 68416.m00809 mov34 family protein similar to SP|P467...    29   2.2  
At1g41920.1 68414.m04842 hypothetical protein                          29   2.2  
At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative / anti...    28   6.6  
At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative / anti...    28   6.6  
At1g26665.1 68414.m03247 expressed protein                             27   8.7  
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At1g68790.1 68414.m07863 expressed protein
          Length = 1085

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1    DFGVQINLPKRGEPDDDIITIQG--YEEKALQAKDAIMAIVHQLDNQCKEEVDID-PRVH 171
            D G+ + LP+  +PDD +  + G  +E  A +       I    +   + E+  D PR  
Sbjct: 797  DLGITVKLPESSQPDDSLDRVSGEDHEPSATEQSFTDSRIQEGPEGSLQSEMKSDKPRRG 856

Query: 172  RRLIGLRGKNIRRIMDEFKVDIRFPKHGD 258
            R     RGK++R      K   R  K  D
Sbjct: 857  RGRGRGRGKSVRGRSQATKAVSRDSKPSD 885


>At3g06820.1 68416.m00809 mov34 family protein similar to SP|P46736
           C6.1A protein {Homo sapiens}; contains Pfam profile
           PF01398: Mov34/MPN/PAD-1 family
          Length = 324

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 529 VWKPCQVHVAPTDPLSPQNQQQQAFRYSRSLHRCRY*SFRSEHYRSQRETAR 374
           V K   +HV PT  L P N    +F   +SL R  Y   R+ +Y+S ++  R
Sbjct: 191 VRKEVPLHVLPTSSLLPVNSPLASF---KSLQRVLYEEERAAYYQSVQQNMR 239


>At1g41920.1 68414.m04842 hypothetical protein
          Length = 496

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 59  LFKDTKRRLCKLKTPLWRSYINWITNAKKK 148
           L K TK++LCKL+   W S +N + +  KK
Sbjct: 351 LVKSTKQQLCKLRDDGWDSLVNEVFSFCKK 380


>At1g54100.2 68414.m06167 aldehyde dehydrogenase, putative /
           antiquitin, putative strong similarity to SP|Q41247
           Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
           (Antiquitin 1) (Brassica
           turgor-responsive/drought-induced gene 26 protein)
           (Btg-26) {Brassica napus}; similar to turgor-responsive
           protein 26G (aldehyde dehydrogenase family 7 member A1)
           [Pisum sativum] SWISS-PROT:P25795
          Length = 508

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 357 IGYVLQVFLGQVQEVILSIEHVVFITRDHHNAIITMFRETYVHLEL 220
           +G +L   +G+VQEVI   +  V ++R  + ++I   R  ++ LE+
Sbjct: 106 MGKILAEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLEM 151


>At1g54100.1 68414.m06166 aldehyde dehydrogenase, putative /
           antiquitin, putative strong similarity to SP|Q41247
           Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3)
           (Antiquitin 1) (Brassica
           turgor-responsive/drought-induced gene 26 protein)
           (Btg-26) {Brassica napus}; similar to turgor-responsive
           protein 26G (aldehyde dehydrogenase family 7 member A1)
           [Pisum sativum] SWISS-PROT:P25795
          Length = 508

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 357 IGYVLQVFLGQVQEVILSIEHVVFITRDHHNAIITMFRETYVHLEL 220
           +G +L   +G+VQEVI   +  V ++R  + ++I   R  ++ LE+
Sbjct: 106 MGKILAEGIGEVQEVIDMCDFAVGLSRQLNGSVIPSERPNHMMLEM 151


>At1g26665.1 68414.m03247 expressed protein
          Length = 189

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +1

Query: 109 AIVHQLDNQCKEEVDIDPRVHRRLIGL--RGKNIRRIMDEFKVDIRFPKHGDDSVVVITG 282
           ++V +LDN  K     + ++   ++ L   GKN     DEF  D+       + V    G
Sbjct: 77  SLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKN----PDEFTKDVLNSCIARNQVT--KG 130

Query: 283 DEDNVLDAKDHLLNLAEEYLQDVADRYQAPAAPSLAD 393
             D   D + H+L   E+   D  D Y+   A S A+
Sbjct: 131 KTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAE 167


>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1322

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 475 NQQQQAFRYSRSLHRCRY*SFRSEHYRSQRETARLALGNDRLRLAS 338
           +++   +RYSR L    +  +   H R+   T+ LA+ +DRL+  S
Sbjct: 286 DEETGGYRYSRELDP-NFQHYSRNHVRNSGGTSALAMESDRLKAGS 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,450
Number of Sequences: 28952
Number of extensions: 254639
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)