Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O09
(264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 75 2e-15
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 58 2e-10
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 50 7e-08
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 44 3e-06
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 38 3e-04
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 36 7e-04
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 36 7e-04
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 28 0.24
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 0.24
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 0.75
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 24 3.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 23 9.2
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 74.5 bits (175), Expect = 2e-15
Identities = 34/83 (40%), Positives = 47/83 (56%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RSLHDALCV+RC+ ++ + C+RA+++ALE++P
Sbjct: 391 RSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIP 450
Query: 183 STFAENAGLNPIETVTELRAAHA 251
T AENAGLN I+ VTELR+ HA
Sbjct: 451 VTLAENAGLNAIQVVTELRSRHA 473
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 58.0 bits (134), Expect = 2e-10
Identities = 29/84 (34%), Positives = 41/84 (48%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
R+LHDALCVVR + R D Y + A+ADAL+ +P
Sbjct: 402 RALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIP 461
Query: 183 STFAENAGLNPIETVTELRAAHAR 254
AEN+GL+ IE +T ++A H +
Sbjct: 462 LALAENSGLSSIEALTAVKARHVK 485
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 49.6 bits (113), Expect = 7e-08
Identities = 27/83 (32%), Positives = 36/83 (43%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
R+L DA+ V R V + RA ADA+E++P
Sbjct: 387 RNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIP 446
Query: 183 STFAENAGLNPIETVTELRAAHA 251
T +N G NPI+ +TELRA HA
Sbjct: 447 RTLVQNCGANPIKALTELRAKHA 469
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 44.4 bits (100), Expect = 3e-06
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +3
Query: 141 YCLRAYADALEVVPSTFAENAGLNPIETVTELRAAH 248
+ ++ Y +A EVVP T +ENAGL+P + +++L AAH
Sbjct: 436 HAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAH 471
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 37.5 bits (83), Expect = 3e-04
Identities = 20/84 (23%), Positives = 33/84 (39%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RSLHDA+ +V+ + + A+A +LEV+P
Sbjct: 392 RSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIP 451
Query: 183 STFAENAGLNPIETVTELRAAHAR 254
+NAG + + +LR HA+
Sbjct: 452 RQLCDNAGFDSTNILNKLRMQHAK 475
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 36.3 bits (80), Expect = 7e-04
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
R++HDAL V+ + A+A AL +P
Sbjct: 384 RAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLP 443
Query: 183 STFAENAGLNPIETVTELRAAH 248
+ A+NAG + E V +L+AAH
Sbjct: 444 TILADNAGFDSSELVAQLKAAH 465
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 36.3 bits (80), Expect = 7e-04
Identities = 21/83 (25%), Positives = 31/83 (37%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RS+HD+L VV+ + + +A AL ++P
Sbjct: 395 RSMHDSLSVVKRTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALLIIP 454
Query: 183 STFAENAGLNPIETVTELRAAHA 251
T A NA + E +LRA HA
Sbjct: 455 RTLAVNAAKDSTELTAKLRAYHA 477
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 0.24
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 153 AYADALEVVPSTFAENAGLNPIETVTELR 239
AYADAL ++P T A N+ + + + L+
Sbjct: 440 AYADALLIIPKTLAANSSYDTQDAIVALQ 468
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 0.24
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 177 VPSTFAENAGLNPIETVTEL 236
+ STF EN LNPI T+ EL
Sbjct: 604 IASTFCENQDLNPIATLFEL 623
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 0.75
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 170 KCICIRAEAVVVSSGGSYRSASQCRGGGCLGCSA 69
KCIC+ +V++ SG R+ + C+G +A
Sbjct: 363 KCICLTDLSVILLSGSFSRNLERVHLSYCIGLTA 396
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 24.2 bits (50), Expect = 3.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 180 PSTFAENAGLNPIETVTELRAAHARAAD 263
PS+F+ENA L + +T ++A +R +
Sbjct: 1011 PSSFSENANLQNLLFLTAIKADKSRVME 1038
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 22.6 bits (46), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 194 GERRSQSNRNSDRATRCARP 253
G RRSQ + N +RAT A P
Sbjct: 14 GLRRSQRSMNLNRATLLAPP 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,265
Number of Sequences: 5004
Number of extensions: 6280
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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