Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O09
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.84 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   1.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   4.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 0.84
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 180 PSTFAENAGLNPIETVTELR 239
           P+TF  N   NPI+TV+ L+
Sbjct: 324 PATFTCNVRGNPIKTVSWLK 343


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 6   SLHDALCVVRCVARR 50
           S++ + C +RC+A+R
Sbjct: 75  SINHSACAIRCLAQR 89


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 104 QCRGGGCLGCSA 69
           QC    C+GCSA
Sbjct: 84  QCSCNKCIGCSA 95


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 125 GSYRSASQCRGGGCLG 78
           G YRSAS   G G +G
Sbjct: 108 GGYRSASPSPGMGHMG 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,821
Number of Sequences: 438
Number of extensions: 391
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)