Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O09
(264 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 76 3e-15
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 57 2e-09
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 57 2e-09
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 46 5e-06
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 43 2e-05
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 43 3e-05
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 42 6e-05
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 40 3e-04
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 36 0.004
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 36 0.004
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)... 27 1.3
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 27 2.3
At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5) i... 26 3.0
At3g26300.1 68416.m03282 cytochrome P450 family protein contains... 26 3.9
At1g17680.2 68414.m02189 transcription factor-related low simila... 25 6.9
At1g17680.1 68414.m02188 transcription factor-related low simila... 25 6.9
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 76.2 bits (179), Expect = 3e-15
Identities = 37/84 (44%), Positives = 47/84 (55%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RSLHDALCVVRC+ + + YC++++A+ALEV+P
Sbjct: 400 RSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKSFAEALEVIP 459
Query: 183 STFAENAGLNPIETVTELRAAHAR 254
T AENAGLNPI VTELR HA+
Sbjct: 460 YTLAENAGLNPIAIVTELRNKHAQ 483
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 56.8 bits (131), Expect = 2e-09
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RS+HDALCV R + R + Y +RA+A+AL+ VP
Sbjct: 320 RSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVP 379
Query: 183 STFAENAGLNPIETVTELRA 242
AEN+GL PIET++ +++
Sbjct: 380 MALAENSGLQPIETLSAVKS 399
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.8 bits (131), Expect = 2e-09
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RS+HDALCV R + R + Y +RA+A+AL+ VP
Sbjct: 396 RSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVP 455
Query: 183 STFAENAGLNPIETVTELRA 242
AEN+GL PIET++ +++
Sbjct: 456 MALAENSGLQPIETLSAVKS 475
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 45.6 bits (103), Expect = 5e-06
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RSLHDALCV+ + + A++ AL +P
Sbjct: 383 RSLHDALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELARKTAGKKSHAIEAFSRALVAIP 442
Query: 183 STFAENAGLNPIETVTELRAAH 248
+T A+NAGL+ E V +LRA H
Sbjct: 443 TTIADNAGLDSAELVAQLRAEH 464
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/85 (27%), Positives = 33/85 (38%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
R+LHDALC+V+ + + +ADAL ++P
Sbjct: 393 RALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIP 452
Query: 183 STFAENAGLNPIETVTELRAAHARA 257
A NA + E V +LRA H A
Sbjct: 453 KVLAVNAAKDATELVAKLRAYHHTA 477
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 42.7 bits (96), Expect = 3e-05
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
RSLHDA+ +VR + + +YA ALEV+P
Sbjct: 390 RSLHDAIMIVRRAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSYAKALEVIP 449
Query: 183 STFAENAGLNPIETVTELRAAHA 251
+NAG + + + +LR HA
Sbjct: 450 RQLCDNAGFDATDVLNKLRQKHA 472
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 135 DHYCLRAYADALEVVPSTFAENAGLNPIETVTELRAAH 248
D Y + YA++ E VP T A+NAGLN +E + L H
Sbjct: 437 DKYAITKYAESFEFVPKTLADNAGLNAMEIIAALYTGH 474
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +3
Query: 3 RSLHDALCVVRCVARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLRAYADALEVVP 182
R+L DA+ V R + + + + A A A E +P
Sbjct: 389 RNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSATIEGIEKWPYEAAAIAFEAIP 448
Query: 183 STFAENAGLNPIETVTELRAAHA 251
T A+N G+N I T+T L+ HA
Sbjct: 449 RTLAQNCGVNVIRTMTALQGKHA 471
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 147 LRAYADALEVVPSTFAENAGLNPIETVTELRAAH 248
+ A+A+AL VVP T AENAGL+ + + L + H
Sbjct: 440 VEAFANALLVVPKTLAENAGLDTQDVIISLTSEH 473
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 147 LRAYADALEVVPSTFAENAGLNPIETVTELRAAH 248
+ A+A+AL VVP T AENAGL+ + + L + H
Sbjct: 441 VEAFANALLVVPKTLAENAGLDTQDVIISLTSEH 474
>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
identical to telomerase reverse transcriptase
[Arabidopsis thaliana] GI:5880683
Length = 1123
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 104 QCRGGGCLGCSA 69
+CRG GCLGCS+
Sbjct: 43 RCRGQGCLGCSS 54
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 165 ALEVVPSTFAENAGLNPIETVTELRA 242
+L +P A N+GL PIET++ +++
Sbjct: 77 SLRSIPMALALNSGLQPIETLSAVKS 102
>At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5)
identical to SUVH5 [Arabidopsis thaliana] GI:13517751;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH5 (SUVH5) GI:13517750
Length = 794
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 194 RKR*GHNFKCICIRAEAVVVSSGGSYRSASQCRG 93
RKR G NFK +C A ++ S G + S +Q G
Sbjct: 333 RKRDGGNFKVVC-EASKILKSKGKNLYSGTQIIG 365
>At3g26300.1 68416.m03282 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 500
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 229 VTVSIGLRPAFSANVEGTTSSASAY 155
+TVS+ R AFS N EGT ++ +
Sbjct: 177 LTVSVVCRTAFSVNFEGTVLNSERF 201
>At1g17680.2 68414.m02189 transcription factor-related low
similarity to SP|P33339 Transcription factor tau 131 kDa
subunit (TFIIIC 131 kDa subunit) Saccharomyces
cerevisiae, transcription factor IIIC102 short isoform
[Homo sapiens] GI:18481637
Length = 896
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 147 LRAYADALEVVPSTFAENAGLNPIETVTELRAAHAR 254
L+ Y +ALE+V +A + P+ET EL++ A+
Sbjct: 634 LQRYWEALEIVNLARRLDAKMLPVETKKELQSLGAK 669
>At1g17680.1 68414.m02188 transcription factor-related low
similarity to SP|P33339 Transcription factor tau 131 kDa
subunit (TFIIIC 131 kDa subunit) Saccharomyces
cerevisiae, transcription factor IIIC102 short isoform
[Homo sapiens] GI:18481637
Length = 896
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 147 LRAYADALEVVPSTFAENAGLNPIETVTELRAAHAR 254
L+ Y +ALE+V +A + P+ET EL++ A+
Sbjct: 634 LQRYWEALEIVNLARRLDAKMLPVETKKELQSLGAK 669
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,398
Number of Sequences: 28952
Number of extensions: 38031
Number of successful extensions: 142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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