Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O08
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   186   1e-48
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    29   0.47 
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    27   1.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   1.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.9  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.5  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   2.5  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   5.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.8  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   7.7  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  186 bits (454), Expect = 1e-48
 Identities = 92/185 (49%), Positives = 127/185 (68%), Gaps = 2/185 (1%)
 Frame = +3

Query: 3   KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
           KI+K  + +P   +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARS 536
           ++A LED+VFP EI+GKR R   DG + IKV LD     T+++K+ +F SVY K  G   
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183

Query: 537 DFRVP 551
            F  P
Sbjct: 184 TFEFP 188



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +1

Query: 499 SSLYTRSLTGREVTFEFP 552
           SS+Y + LTG+ VTFEFP
Sbjct: 172 SSVYHK-LTGKNVTFEFP 188


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +3

Query: 339 RTLTSVYDAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTF-QSVYQ 515
           ++L + YD   EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621

Query: 516 KFDGARSDFRVP 551
           +   + + F++P
Sbjct: 622 QSTKSTASFQLP 633


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 33  DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 143
           +T+E  I + L++L + S++  Q+  ++I    E+E+
Sbjct: 78  ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 252  HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAXLEDLVFPAEIVGKRIRVKLDG 431
            H V V D+ +   P       N+Q   R  +L+ + D   +  V   E V  R   K  G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650

Query: 432  SQLIKVHLD-XNQQTTIEHKV 491
            S ++   LD  + Q   EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 9    LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 116
            +KA A I+PD FE +I Q L +     N  LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 165 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 257
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 449 HFDEL*AIELHSDA--FANN--LGREYQIFQXGVIYRSQCPGTGPFLFV 315
           H D +  ++  +DA  F+N+  +   + +   G+IYRS CP    F F+
Sbjct: 36  HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 222 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAXLEDLVFPAEIV 401
           ++LEK+F G       +  + PK     +   K    RSR L   + A + + VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166

Query: 402 GKRIRV 419
           G  IR+
Sbjct: 167 GVDIRL 172


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 6    ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 143
            I + G +  +TF+  +SQA ++    + L   +RE ++    E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 285 PKPSHKTRVANKQKRPRSRTLTSVYDAXLEDLVFPAEIVGKR 410
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,245
Number of Sequences: 5004
Number of extensions: 46324
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)