Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O08
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              148   3e-36
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             31   0.65 
SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)                   31   0.86 
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         31   0.86 
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  29   2.0  
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   3.5  
SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    27   8.0  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   8.0  
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09)                 27   8.0  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         27   8.0  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.0  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  148 bits (359), Expect = 3e-36
 Identities = 77/127 (60%), Positives = 97/127 (76%), Gaps = 3/127 (2%)
 Frame = +3

Query: 3   KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182
           KI+K      + FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP+P
Sbjct: 10  KIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVP 69

Query: 183 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS---RTLTS 353
           +++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS   +T  +
Sbjct: 70  QIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRSHLDKTQQT 128

Query: 354 VYDAXLE 374
             D  LE
Sbjct: 129 TIDHKLE 135



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 23/34 (67%)
 Frame = +3

Query: 450 HLDXNQQTTIEHKVDTFQSVYQKFDGARSDFRVP 551
           HLD  QQTTI+HK++TF +VY+K  G    F  P
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 460 KTNRQLLNTRLTPSSLYTRSLTGREVTFEFP 552
           KT +  ++ +L   S   + LTG++V FEFP
Sbjct: 124 KTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = +3

Query: 81  NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 245
           + + K  L+E+ I ++K+ E   + + KS       PKLKA Q    +   +  KK    
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320

Query: 246 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 338
               K V+       LP+ +H+   AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354


>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
          Length = 185

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 333 GAFSVCWLHVSCGWAWAGSYGH 268
           GAF VCWL  S G +W  + GH
Sbjct: 105 GAFVVCWLPYSIGTSWKLATGH 126


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
 Frame = -3

Query: 547  TRKSLRAPSNFWYTDWKVSTLCSIVVCWFXSRCTLMSCEPSSFT--LMRLPT-------I 395
            T+K++R P+N WY         S  V W+ ++  L + +P  F+  L+  PT       I
Sbjct: 1741 TKKTVRGPANEWYDAVAALLRQSSAVRWWFAKEVLFA-QPDRFSEYLLESPTAEPHPKRI 1799

Query: 394  SAGNTRSSNXASY-TEVSVLERGLFCLLATR 305
            S GN  S    +Y +++S  +   F L+  R
Sbjct: 1800 SNGNIESDAIETYISQLSAQQDKRFALIPRR 1830


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = +3

Query: 3   KILKAGAIEP---DTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 173
           K ++ G + P   + ++T ++     L  +  L+  +RELY    +E E   KKS++ ++
Sbjct: 158 KCVQEGPVTPMAQEQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHI 217

Query: 174 PM-PKLKAFQ 200
            + PK+K  +
Sbjct: 218 LVKPKVKGVE 227


>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 190 RHSKRSKSGLSVS*KRSSAVSMLCS 264
           RH  RS+S L +  K+S AV++LCS
Sbjct: 574 RHRSRSRSRLEIVSKKSPAVNVLCS 598


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
 Frame = +3

Query: 75   ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKF 242
            E N+ LK +L E    L +T+ +E E+ N K + +YV M KL++ Q        ELEK+ 
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE- 1756

Query: 243  SGKHVVFVGDRKILP-KPSHKTRVANKQ 323
                 ++   ++I P K S  T VA  +
Sbjct: 1757 -----LYSAQQEIQPLKDSFNTAVAENE 1779


>SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = -3

Query: 511 YTDWKVSTLCSIVVCWFXSRCTLMSCEPSSFTLMRLPTISAGNTRSSNXASYTEVSVLER 332
           +T   + T  ++V C     C  +    S  T++ +P      TRS N +  + + +L R
Sbjct: 46  FTCVTIVTCATVVTCVTVITCVTVIAYVSGLTVLLMPV-----TRSRNMSRVSVLRLLSR 100

Query: 331 GLFCLLATR 305
           GLF  +  +
Sbjct: 101 GLFLTITNQ 109


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 33  DTFETSISQALVELETNSDLKAQLRELYITKAKE-IELHNKKSIII 167
           +T +    + + +LE   D KAQL EL + KAKE   L   KS  +
Sbjct: 224 ETLQEQEKETIQQLE--EDFKAQLNELEVEKAKEQTALEEMKSFTV 267


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 171 VPMPKLKAFQKIQIRLVRELEKKFSG 248
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
 Frame = +3

Query: 36  TFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKLKAFQ 200
           T   +  Q   E++T+ + K  +RE  ITK K +     E   +++++    + K+    
Sbjct: 241 TLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKVAKLY 300

Query: 201 KIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 302
           + + + +RE+E++F     K+   + +R++  +   K
Sbjct: 301 EEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337


>SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09)
          Length = 224

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 361 SYTEVSVLERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLIWIFW 197
           SY  +S +   +  L A R L L   ++   P +T  LPL +F  S   +  +FW
Sbjct: 60  SYNRLSFIPADIGKLRALRELNLEGNQLGAMPISTLFLPLKYFRISNNFIHPLFW 114


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/91 (21%), Positives = 41/91 (45%)
 Frame = +3

Query: 9   LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 188
           LKA      T ET  S    E E ++      RE+  +  ++   H+++   +      L
Sbjct: 35  LKASQFRKLTRETGASVLRNERERSAKRAQAFREISPSSPQDRRKHSERRPFLATECDNL 94

Query: 189 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKI 281
           +  +K + +++RE+ KK +      +G+ +I
Sbjct: 95  QEAEKWRHQIIREVAKKVAQIQNAGLGEFRI 125


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 270 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAXLED 377
           D  I+P P H+T   N +K      L S+ D   +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,811
Number of Sequences: 59808
Number of extensions: 358470
Number of successful extensions: 1112
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)