SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O08
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   212   2e-55
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z50863-5|CAA90738.2|  746|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z50863-4|CAL36493.1|  412|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z49153-2|CAA89023.2|  746|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z48582-3|CAA88464.1|  401|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    27   7.0  
U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast...    27   7.0  
U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast...    27   7.0  
U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast...    27   7.0  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  212 bits (517), Expect = 2e-55
 Identities = 101/184 (54%), Positives = 134/184 (72%), Gaps = 1/184 (0%)
 Frame = +3

Query: 3   KILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 182
           K+LK+        E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 183 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 359
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 360 DAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARSD 539
           DA L++LV+PAE+VG+RIRVKLDG ++ KVHLD + QT + HK+  F SVY+K  G    
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVT 186

Query: 540 FRVP 551
           F  P
Sbjct: 187 FEFP 190



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +1

Query: 499 SSLYTRSLTGREVTFEFPE 555
           +S+Y R LTG++VTFEFP+
Sbjct: 174 ASVY-RKLTGKDVTFEFPD 191


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 387 GIPDLPIXRHIQKSVSWNGAFSVCWLHVSCGWAW 286
           GIP+      +  S++W+G  + C+   +C  AW
Sbjct: 5   GIPNTTNNTQVNTSLTWDGCLTACFYSPACVMAW 38


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
           protein C06B3.2 protein.
          Length = 665

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 330 AFSVCWLHVSCGWAWAGSYGH 268
           A SV W+ +SC + WAG  G+
Sbjct: 572 ALSVLWIILSCHYGWAGPIGN 592


>Z50863-5|CAA90738.2|  746|Caenorhabditis elegans Hypothetical
           protein C14H10.2a protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 4/182 (2%)
 Frame = +3

Query: 21  AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
           A +  TFE+  +Q L EL+      A QL+ + + K KE+E H   +     P  K    
Sbjct: 394 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 447

Query: 198 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAX 368
           +  Q+  +++  +K    +V    + +   K   K R   + K     R R +T    A 
Sbjct: 448 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 507

Query: 369 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARSDFRV 548
           L+ +V  ++   +    K +  + +K  ++  QQ  IE   +  +   QKF     ++  
Sbjct: 508 LQSVVSSSQ---EEALKKEEELKKLKATVEL-QQAEIEKMHEDKKEADQKFKNLEKEYAA 563

Query: 549 PR 554
            R
Sbjct: 564 YR 565


>Z50863-4|CAL36493.1|  412|Caenorhabditis elegans Hypothetical
           protein C14H10.2b protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 4/182 (2%)
 Frame = +3

Query: 21  AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
           A +  TFE+  +Q L EL+      A QL+ + + K KE+E H   +     P  K    
Sbjct: 60  AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 113

Query: 198 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAX 368
           +  Q+  +++  +K    +V    + +   K   K R   + K     R R +T    A 
Sbjct: 114 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 173

Query: 369 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARSDFRV 548
           L+ +V  ++   +    K +  + +K  ++  QQ  IE   +  +   QKF     ++  
Sbjct: 174 LQSVVSSSQ---EEALKKEEELKKLKATVEL-QQAEIEKMHEDKKEADQKFKNLEKEYAA 229

Query: 549 PR 554
            R
Sbjct: 230 YR 231


>Z49153-2|CAA89023.2|  746|Caenorhabditis elegans Hypothetical
           protein C14H10.2a protein.
          Length = 746

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 4/182 (2%)
 Frame = +3

Query: 21  AIEPDTFETSISQALVELETNSDLKA-QLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
           A +  TFE+  +Q L EL+      A QL+ + + K KE+E H   +     P  K    
Sbjct: 394 AAKQSTFESEKTQLLKELDEVKKAHANQLKSIALIK-KELEDHKAAA-----PSVKPTLS 447

Query: 198 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR---PRSRTLTSVYDAX 368
           +  Q+  +++  +K    +V    + +   K   K R   + K     R R +T    A 
Sbjct: 448 ESEQVDALQQKFEKAEAANVSINEELRSASKELGKIRFQMQGKESDLSRERKMTEALSAQ 507

Query: 369 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARSDFRV 548
           L+ +V  ++   +    K +  + +K  ++  QQ  IE   +  +   QKF     ++  
Sbjct: 508 LQSVVSSSQ---EEALKKEEELKKLKATVEL-QQAEIEKMHEDKKEADQKFKNLEKEYAA 563

Query: 549 PR 554
            R
Sbjct: 564 YR 565


>Z48582-3|CAA88464.1|  401|Caenorhabditis elegans Hypothetical
           protein F27E5.1 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 30  PDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY--VPMPKLKAFQK 203
           PD ++ + S+ ++  + N DL  + R   I KA + E+H    ++ Y    +P + A++ 
Sbjct: 39  PDIYDPAQSEKVLWFDVNLDLPPRQRFQQIAKAYKKEIHAVFDVLNYFLTIIPGVNAWEL 98

Query: 204 IQIRLVRELEK 236
           I       L+K
Sbjct: 99  IGNMTASALDK 109


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +3

Query: 9    LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 188
            LK  A  P++  TSI Q L+ ++  +  +    E  ++ +K+IE+H +   +        
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261

Query: 189  KAFQKIQIRLVRELEKKFSGKHVVFV 266
            +  QK  ++LV     K       F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +3

Query: 9    LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 188
            LK  A  P++  TSI Q L+ ++  +  +    E  ++ +K+IE+H +   +        
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261

Query: 189  KAFQKIQIRLVRELEKKFSGKHVVFV 266
            +  QK  ++LV     K       F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +3

Query: 9    LKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 188
            LK  A  P++  TSI Q L+ ++  +  +    E  ++ +K+IE+H +   +        
Sbjct: 2204 LKYTASTPES--TSIGQRLLTIKATTSDENDTIEYSLSGSKDIEIHPETGDVTITGQLDY 2261

Query: 189  KAFQKIQIRLVRELEKKFSGKHVVFV 266
            +  QK  ++LV     K       F+
Sbjct: 2262 EKTQKYDLKLVATSSGKQVSSEAEFI 2287


>U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform c protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 401 WQTHQSEARWLTTHQSASRXKPTDNY 478
           W+ H+SE  WLT  Q     + T NY
Sbjct: 171 WRFHKSEQVWLTRSQYGGVKEQTGNY 196


>U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform b protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 401 WQTHQSEARWLTTHQSASRXKPTDNY 478
           W+ H+SE  WLT  Q     + T NY
Sbjct: 221 WRFHKSEQVWLTRSQYGGVKEQTGNY 246


>U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform a protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 401 WQTHQSEARWLTTHQSASRXKPTDNY 478
           W+ H+SE  WLT  Q     + T NY
Sbjct: 298 WRFHKSEQVWLTRSQYGGVKEQTGNY 323


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 300 KTRVANKQKRPRSRTLTSVYDAXLEDLVFPAE 395
           K ++  K K  RSR+L++V  A  ++L FP E
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPDE 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,871,684
Number of Sequences: 27780
Number of extensions: 268332
Number of successful extensions: 741
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -