Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O08
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 175 2e-44
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 175 2e-44
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 172 1e-43
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 163 1e-40
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 163 1e-40
At4g15710.1 68417.m02391 hypothetical protein 28 3.7
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 28 5.0
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 28 5.0
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 5.0
At5g40640.1 68418.m04933 expressed protein 27 8.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 175 bits (425), Expect = 2e-44
Identities = 89/185 (48%), Positives = 129/185 (69%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARS 536
++A LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+K G
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDV 182
Query: 537 DFRVP 551
F P
Sbjct: 183 VFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 175 bits (425), Expect = 2e-44
Identities = 89/185 (48%), Positives = 129/185 (69%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARS 536
++A LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+K G
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDV 182
Query: 537 DFRVP 551
F P
Sbjct: 183 VFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 172 bits (419), Expect = 1e-43
Identities = 91/185 (49%), Positives = 126/185 (68%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K EP E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARS 536
++A LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T VY+K G
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDV 182
Query: 537 DFRVP 551
F P
Sbjct: 183 VFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 163 bits (395), Expect = 1e-40
Identities = 83/185 (44%), Positives = 126/185 (68%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARS 536
++A L+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VY+K G
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDV 182
Query: 537 DFRVP 551
F P
Sbjct: 183 VFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 163 bits (395), Expect = 1e-40
Identities = 83/185 (44%), Positives = 126/185 (68%), Gaps = 2/185 (1%)
Frame = +3
Query: 3 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 176
KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 356
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 357 YDAXLEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSVYQKFDGARS 536
++A L+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VY+K G
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDV 182
Query: 537 DFRVP 551
F P
Sbjct: 183 VFEFP 187
>At4g15710.1 68417.m02391 hypothetical protein
Length = 141
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -2
Query: 155 FFVMKFNFLGLGNVQFPQLSLQVRVSLKFNKSLRDRSLEGVGFYS 21
FF MKF + G G++ + + +L++R +L + ++RD + V +S
Sbjct: 89 FFAMKFEWAGEGDLDYTRSNLELR-TLLIDAAMRDHDDDYVRAWS 132
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 487 LCSIVVCWFXSRCTLMSCEPSSFTLMRLPTISAGNTRSSNXASYTEVSVLERGLFC 320
+C WF C M+ E + TL LP+ + + +S +S+++V+ LFC
Sbjct: 820 VCPPTPLWFCKCCNRMTLELAPETLFALPSFPS-DLKSLPKSSFSKVASKPFCLFC 874
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 390 AEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 509
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 138 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 287
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 195 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 362
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,126,452
Number of Sequences: 28952
Number of extensions: 249095
Number of successful extensions: 669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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