Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O06
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.44 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.44 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   1.8  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   9.5  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 24  NEMSDFPRRMRDWLFNIMRDLAERREL---TPHYLR 122
           N+  DF + M D++   + ++ +RR L    P YLR
Sbjct: 4   NQFKDFAKEMIDYVSGYLENIRDRRVLPTVEPGYLR 39


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 443 AKYYCRILKAPMLQVIDEFVAAVLQLVLIELQTFAPLGERD-AVVLVRIALVEE 285
           A Y C   +A ++ ++  F+AA+    ++ +  + P    D ++V V  +LVE+
Sbjct: 178 AGYICTKTRASLICLLAWFIAALFTSPILAITQYGPEEYVDGSIVFVCFSLVED 231


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 239 PDPGAAHVPGA 271
           PDPG+  VPGA
Sbjct: 139 PDPGSLQVPGA 149


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 300 DADEDHRITLAEWGKCLQLDEYELEDRCDEFIDDL*HWCFEN 425
           D D   RI     GK L  D+   +DR D+ + +  H    N
Sbjct: 180 DTDMHGRIKSERNGKDLDDDDMNDDDRKDDLLGNNMHHILGN 221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,616
Number of Sequences: 336
Number of extensions: 1906
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)