Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O06
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199...    29   2.5  
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53...    29   3.3  
12_02_0016 + 12350435-12350537,12351517-12351583,12351981-123520...    28   4.4  
02_04_0576 + 24009297-24009980,24010062-24010376                       28   4.4  
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    28   5.8  
02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581           27   7.7  

>01_05_0422 -
           22018579-22018698,22019548-22019644,22019744-22019908,
           22022274-22022339,22022441-22022540,22022662-22023304
          Length = 396

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 204 DNDRFVSRHELFPIRAPLMSLEHC-----IAPFLDQCDADEDHRITLAE 335
           D+D F+S HEL P+   L   E        A  + + D D D R+TL E
Sbjct: 322 DSDGFISEHELEPVLDKLHLSERYYARQQAAHAISEADKDHDGRLTLDE 370


>05_01_0079 +
           531617-531734,531987-532059,532152-532261,532400-532543,
           532628-532736,532836-533182,533260-533333,533478-533782,
           534168-534294,534385-534414,534589-534837
          Length = 561

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 264 LEHCIAPFLDQCDADEDHRITLA--EWGKCLQLD 359
           L H +  FL  CD+ + H   L+  EW   LQLD
Sbjct: 322 LSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLD 355


>12_02_0016 +
           12350435-12350537,12351517-12351583,12351981-12352047,
           12352301-12352381,12352416-12352445,12352625-12352665,
           12353083-12353212,12354096-12354327,12355244-12355332
          Length = 279

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -2

Query: 440 KYYCRILKAPMLQVIDEFVAAVLQLVLIELQTFAP 336
           +++ +I+    L V+D+F+AA+     ++L+ +AP
Sbjct: 203 RHHTQIIVEDSLPVVDDFIAAISDFFALDLRHWAP 237


>02_04_0576 + 24009297-24009980,24010062-24010376
          Length = 332

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +3

Query: 135 AESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPF-LDQCDAD 308
           A + +T R   AA+   CD D H  +    RHE  P+      L     PF   Q  AD
Sbjct: 78  APAAVTCRADAAALCAACDADIHSANPLARRHERLPVAPFFGPLADAPQPFPFSQAAAD 136


>08_02_1014 - 23586552-23587224,23587402-23587463,23587735-23587950,
            23588125-23588209,23589232-23589389,23589505-23589625,
            23590081-23590243,23590330-23590415,23590660-23590742,
            23590816-23591677,23593266-23593693
          Length = 978

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/61 (36%), Positives = 24/61 (39%)
 Frame = -3

Query: 259  MSGARIGNNSCRDTNLSLSCASRSHHFQMAALVQRRVRLDSASRSMRR*WGVSSRRSARS 80
            + GAR G N   D + SL      H F      Q R RLD           V  RRSAR 
Sbjct: 913  LQGAREGWNQ-GDESSSLYTNQSKHQFSSKLTEQYRRRLDGTEHDPGEANSVLLRRSARE 971

Query: 79   R 77
            R
Sbjct: 972  R 972


>02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581
          Length = 349

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 135 AESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPI 245
           A + +T +   AA+   CD D HD +    RHE  P+
Sbjct: 68  APAAVTCKADAAALCAACDSDIHDANPLARRHERVPV 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,123,896
Number of Sequences: 37544
Number of extensions: 246143
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)