Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O06
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)               44   6e-05
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)               38   0.004
SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)       33   0.21 
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)       31   0.48 
SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)                     29   2.6  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
          Length = 196

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
 Frame = +3

Query: 12  ECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAESNLTRRWTNA-AIWKWC 188
           EC+ + +  F  R  +W+      ++ RR +  +Y   E E   NL        A W++ 
Sbjct: 73  ECARDNLLQFGERYLEWIL-----ISRRRLVNRYYQVKESEKGHNLPPDMRKELAQWEFD 127

Query: 189 DLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 347
            +D  + D  +S  E+  I  PL+  E CI  F+  CD +++  I   EW  C
Sbjct: 128 RVD-FNRDGVLSGREINSIIGPLLFHERCIYGFVMSCDVNKNSVIDKQEWLLC 179


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
 Frame = +3

Query: 12  ECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREA-ESNLTRRWTNAAIWKWC 188
           +C    + DF  R  +WL    ++       + H +   R A E  L        +W++ 
Sbjct: 679 QCPVERLLDFHSRYLEWLLVAYKE-------SKHAVMDSRVALEGILDEEIKRIIMWEFD 731

Query: 189 DLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 347
           + DA+ ND+ +  HE   +++ +   E C+  F+D CD D    IT  EW  C
Sbjct: 732 NQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 780


>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
          Length = 217

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = +3

Query: 24  NEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAESNLTRRWTNAAIWKW-CDLDA 200
           + MS F  R  +W       +A+ +    +Y    R  +  + ++    AI KW  D + 
Sbjct: 103 DHMSQFRDRYLEWAH-----VAKEQTKDQNYTLTRRIHDMTMRQK---VAIAKWEFDRND 154

Query: 201 HDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYE 368
            D D  +   E+  I A +M  E C A FL  CD +    I+ +EW  C  L E E
Sbjct: 155 LDKDNALEGAEIDNILA-MMIYEPCAAGFLWSCDLNRKQGISRSEWDMCFTLAERE 209


>SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 177 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 347
           W++ + DA+ ND+ +  HE   +++ +   E C+  F+D CD D    IT  EW  C
Sbjct: 1   WEFDNQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 53


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 177 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLE-----HCIAPFLDQCDADEDHRITLAEWG 341
           WK+  LD++  DR ++  E F +    M  +      C    L  CD D+D+ ++L EW 
Sbjct: 373 WKFHQLDSN-RDRIINSREFFVVSMKKMLGKIKRGRKCSRKLLADCDFDKDNGLSLNEWS 431

Query: 342 KCL 350
            CL
Sbjct: 432 YCL 434


>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
          Length = 187

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +3

Query: 174 IWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEH---CIAPFLDQCDADEDHRITLAEWGK 344
           +WK+  LD +  D F+   EL           H   C   F+  CD ++D RI+  EW  
Sbjct: 50  MWKFNQLDTNA-DYFLEWSELHGFLRMSKKAIHPKKCSKTFVGYCDENQDQRISRNEWYA 108

Query: 345 CLQLDE 362
           C  + E
Sbjct: 109 CFGVQE 114


>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
          Length = 452

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 204 DNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQL 356
           D D  +   EL  ++   +  E+CI  F ++CDA +D + +L E     QL
Sbjct: 34  DGDHVLGPEELAEVKE--IPNENCITQFFEKCDATKDGQFSLLESANASQL 82


>SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 456

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 171 AIWKWCDLDAHDNDRFVSRHELFPIRAPLMSL 266
           A+WKW + D H    FV+    + +R PLM+L
Sbjct: 70  AVWKWLNHDFHGRSMFVADIMQY-VRFPLMNL 100


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 187 HHFQMAALVQRRVRLDSASRSMRR*WGVSSRRSARSRIMLNSQSRMRRGKS 35
           H F+  +L + R R   +SRS  R  G S R   RSR   +S S   R +S
Sbjct: 628 HIFKPGSLRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRS 678



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
 Frame = -3

Query: 268 SRDMSGARIGNNSCRDTNLSLSCASRSH-----HFQMAALVQRRVRLDSASRSMRR*WGV 104
           SRD  G+R G    R  + S S  SRS        +     +RR R  S S S       
Sbjct: 650 SRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRSRSSSHSSSSLSRSRS 709

Query: 103 SSRRSARSRIMLNSQSRMRRGKSDISFS 20
            SR   R R    S+S  R+GK   S S
Sbjct: 710 RSRSRGRGRRRSRSRSSSRKGKRQRSRS 737


>SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = -2

Query: 440 KYYCRILKAPMLQVIDEFVAAVLQLVLIELQTFAPLGERDAVVLV 306
           ++YC+++    +Q + +    + Q ++     F PLG  DA  ++
Sbjct: 435 QWYCQLIDGSTIQSVSDLCEKINQFLVSLTSDFEPLGPGDATSIL 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,068
Number of Sequences: 59808
Number of extensions: 258146
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)