Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O06
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    33   0.098
At5g57660.1 68418.m07205 zinc finger (B-box type) family protein...    30   0.91 
At5g24930.1 68418.m02952 zinc finger (B-box type) family protein...    30   1.2  
At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (CO...    30   1.2  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   4.9  
At3g59870.1 68416.m06681 expressed protein hypothetical protein ...    27   6.4  

>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 33.5 bits (73), Expect = 0.098
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +3

Query: 192 LDAHDNDRFVSRHELFPIRAPLMSLEHCIAP-----FLDQCDADEDHRITLAE 335
           LD +D D ++S  EL PI + +   EH  A       + Q D+D+D R+TLAE
Sbjct: 311 LDKND-DGYLSDVELLPIISKIHPTEHYYAKQQADYIISQADSDKDRRLTLAE 362


>At5g57660.1 68418.m07205 zinc finger (B-box type) family protein
           contains Pfam domain, PF00643: B-box zinc finger
          Length = 355

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 132 EAESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIA 281
           +A + +T +   AA+   CD D H  +   SRHE  P+     S E  +A
Sbjct: 66  QAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVA 115


>At5g24930.1 68418.m02952 zinc finger (B-box type) family protein
           similar to CONSTANS-like protein 1 GI:4091804 from
           [Malus x domestica]
          Length = 406

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +3

Query: 132 EAESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLM-------SLEHCIAPFL 290
           +A +++T +   AA+   CD D H  +    RHE  P+  P         S++H    FL
Sbjct: 98  QAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV-TPFYDSVSSDGSVKHTAVNFL 156

Query: 291 DQC 299
           D C
Sbjct: 157 DDC 159


>At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (COL2)
           identical to putative flowering-time gene CONSTANS
           (COL2) GB:AAB67879 GI:1507699 SP:Q96502 (Arabidopsis
           thaliana)
          Length = 347

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 168 AAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHC--IAPFLDQCDADEDHRITLAEW 338
           A++   CD + H  +    RH+  PI  PL S   C  +AP     D DED R  +A W
Sbjct: 76  ASLCTACDAEIHSANPLARRHQRVPI-LPL-SANSCSSMAPSETDADNDEDDR-EVASW 131


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 255  LMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYELEDRC 383
            LM +        ++ + DE+ R+ L E  KCLQ      E  C
Sbjct: 1287 LMDMAQYTEDLKEKINIDEERRVELEERLKCLQAQREHAEQEC 1329


>At3g59870.1 68416.m06681 expressed protein hypothetical protein
           F6E13.7 - Arabidopsis thaliana, PIR:T00674
          Length = 288

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 226 RDTNLSLSCASRSHHFQMAALVQRRVRLDSASRSM 122
           R ++ S SC+S+S  FQ+ ++ +RR R  S S  M
Sbjct: 33  RRSSSSTSCSSQSQSFQLFSVRRRRSRSSSPSIPM 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,902,932
Number of Sequences: 28952
Number of extensions: 175475
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)