Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O05
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 30 1.1
01_01_0363 + 2850954-2853675,2853819-2854225 29 2.4
03_06_0047 + 31266940-31268394 29 3.2
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 28 5.6
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 28 5.6
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 9.9
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 27 9.9
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 27 9.9
05_07_0218 + 28470325-28470454,28470543-28471276,28471355-284718... 27 9.9
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 27 9.9
04_03_0204 + 12643435-12644001 27 9.9
02_05_0722 + 31220798-31220887,31220992-31221036,31221524-312215... 27 9.9
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 27 9.9
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 30.3 bits (65), Expect = 1.1
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Frame = +1
Query: 193 EADPCVCTFIYAPVCGTDGNTYPNKCSLECS-RPLAPSL-------EMKHRGECQEVKVA 348
+ D V +Y P GT P K S+E +P+ + EM + Q + +
Sbjct: 35 QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLL 94
Query: 349 DIQPCICTREIKQVCGSDG-VTYGNPCLLNCATQSNPSLSIEH 474
+ P T I QV G+DG V++ LL+ S L EH
Sbjct: 95 TVHPNTTTSVILQVVGNDGSVSFCRNVLLSIV--SGCLLDYEH 135
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 359 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 243
G S TLTSW+S F + +G H ++G PS
Sbjct: 31 GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69
>03_06_0047 + 31266940-31268394
Length = 484
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 73 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 219
R + C D TY ++CE DK LK+ K ++ P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -2
Query: 522 FRLVFHNLHSVVARTRVFDAQARVRLCGAIQQARVAVSDAVATANLFDLPRADTWLYIGN 343
F ++ H +H +V A R A+Q +RVAV AV F + ++G+
Sbjct: 306 FPVMMHPIHEIVEARLFPSAGGWARKRAAVQASRVAVVGAVTAVACFVPAFGEFAAFVGS 365
Query: 342 --FNFLAFA--AMFHL 307
L+F A+FHL
Sbjct: 366 TVCALLSFVLPALFHL 381
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 377 SRVQIHGCISATLTSWHS 324
+RV+ H CIS+++ WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 245 SVPQTGAYMKVQTQGSASSHVPS 177
S Q G+ M+ Q+QG ASS +PS
Sbjct: 1668 STVQNGSQMQQQSQGPASSAIPS 1690
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 420 PVPVELRHTVEPELEHRTPGSLRQQSEGCGKP 515
P P T+ P ++ + G+L + EG GKP
Sbjct: 358 PAPPAAERTLYPSMDPQRMGALVESQEGDGKP 389
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 359 GCISATLTSWHSPRCFISRDGANGREHSSE 270
GCI+ ++T H+ CF+ A+G + E
Sbjct: 305 GCIAISMTLHHTSLCFVCSHLASGEKEGDE 334
>05_07_0218 +
28470325-28470454,28470543-28471276,28471355-28471816,
28471898-28472730,28472813-28472983,28473063-28473180
Length = 815
Score = 27.1 bits (57), Expect = 9.9
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +1
Query: 259 PNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGVTYGNPCLLNC 438
P KC L P P+L + H ++ +ADI + IK +D +P L+
Sbjct: 543 PPKCKLSIEAPRGPALSVPHSPGGADMDLADIAQSLA--PIKTTRKAD----SSPPLVKG 596
Query: 439 ATQSNPSLSIEHPGPCDNRVKVVENQP--ESNKVI 537
+ +E P R K + P +S KV+
Sbjct: 597 QKRERGKGKVEELAPEPKRGKAATSMPVSKSGKVV 631
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 419 LP*VTPSLPQTCLISRVQIHGCISATLTSWHSPR 318
LP + P +P TCL R +H S+T T H+ +
Sbjct: 198 LPTLLPCVPDTCLTDRNLLHIRESSTKTVLHAAK 231
>04_03_0204 + 12643435-12644001
Length = 188
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 490 CRKDPGVRCSSSGSTVWRNSTGTGC 416
C PG C + VWR +T GC
Sbjct: 135 CAAPPGRTCGAYTQVVWRATTQLGC 159
>02_05_0722 +
31220798-31220887,31220992-31221036,31221524-31221595,
31221743-31221871
Length = 111
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 377 SRVQIHGCISATLTSWHSPRCFISR 303
+R Q+HG ATL +H PR SR
Sbjct: 19 NRAQLHGRCRATLGGFHDPRSNSSR 43
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 248 PSVPQTGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQYKRHWL 117
PSVP+ + T S+ + + T+F + +SLS Y RH L
Sbjct: 291 PSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQISLSSYLRHSL 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,140
Number of Sequences: 37544
Number of extensions: 362862
Number of successful extensions: 1220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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