Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O04
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 31 0.55
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 31 0.73
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 29 1.7
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 28 5.2
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 27 6.8
03_02_1034 + 13555569-13556084,13556096-13556527 27 6.8
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630... 27 6.8
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 27 9.0
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 9.0
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 27 9.0
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 27 9.0
02_05_0313 - 27795152-27795268,27795476-27795515,27795773-277958... 27 9.0
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 27 9.0
01_05_0645 - 23899579-23904483 27 9.0
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 298 RKMLSYNQYNMDKYTYVPTALDMYTTCLRDPVF--WKIMKRVM 420
R+M+SY+ + TY+P +++ C+R+P F W++ +++M
Sbjct: 155 REMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 30.7 bits (66), Expect = 0.73
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -2
Query: 297 EHCHHMEHFGIVIGH-IHATEDKSGKHFHVFGFLQIDHGSI-TTFDFAC*DSFADHLLNI 124
E CH M GIV+GH + EDK + F ++ F +D I T F+ A F++ L+I
Sbjct: 468 EKCHFMVREGIVLGHRVFEREDKIMEKFIIY-FFCLDLLKIQTKFNRAYLLQFSESKLHI 526
Query: 123 I 121
I
Sbjct: 527 I 527
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 103 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 279
KL +LL + +QM++EG LT D + + KK D M + IL MN + +M
Sbjct: 515 KLLVLLQNGKQMVQEGALTALASVADSSQEHFKKYYDAVMPYLKAIL--MNATDKSNRML 572
Query: 280 HMMTM 294
+M
Sbjct: 573 RAKSM 577
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 310 SYNQYNMDKYTYVPTALDMYTTCLRDP-----VFWKIMKRVMNSFVLFKNMLPSYT 462
SY Y ++ + + ++ CL D VFWK + F+L K +LP Y+
Sbjct: 464 SYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFLLRKLILPFYS 519
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 310 SYNQYNMDKYTYVPTALDMYTTCLRDPV-----FWKIMKRVMNSFVLFKNMLPSYT 462
SY Y ++ + + ++ CL D + FWK + F+L K +LP Y+
Sbjct: 449 SYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFLLRKLILPFYS 504
>03_02_1034 + 13555569-13556084,13556096-13556527
Length = 315
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 151 ILTGKIERRDGTMINLK---KPEDVEMLARLILGGMNVANDDA 270
+L+G R DG ++ + P D+ L R+ L G NV D+A
Sbjct: 218 LLSGFATRSDGPELDDQLELTPRDIRRLVRMALKGKNVERDEA 260
>01_07_0310 +
42660671-42660795,42660996-42661026,42662958-42663079,
42663428-42663544,42663881-42663950
Length = 154
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 10 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 147
K +W ++ D P N +PV + N K K QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 409 KRVMNSFVLFKNMLPSYTREELDFPG 486
++V+N+ L N PSY + +D PG
Sbjct: 795 EQVVNTIYLHDNSFPSYLPKSMDLPG 820
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 409 KRVMNSFVLFKNMLPSYTREELDFPG 486
++V+N+ L N PSY + +D PG
Sbjct: 1152 EQVVNTIYLHDNSFPSYLPKSMDLPG 1177
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 115 LLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLARL 234
+LDD+E+ + +G+ T K RD +I ++E+ RL
Sbjct: 382 ILDDLERAVDDGVNTYKSMCRDSRIIPGAAATEIELARRL 421
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 25 PKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGILTGKIER-RDGT 186
PK R+P V ++N VP+T + L + +D+E MI G++++ DGT
Sbjct: 18 PKSRIPKLGGSEVHESNIVPITVDKLTPEQ-KNDLEAMISS--KDGEVQQVSDGT 69
>02_05_0313 -
27795152-27795268,27795476-27795515,27795773-27795873,
27796862-27796921,27797185-27797294,27797911-27798033,
27798148-27798271,27798585-27798642,27798713-27798841,
27799602-27799762
Length = 340
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 301 KMLSYNQYNMDKYTYVPTALDMYTTCLRDPVFWKIMKRVMNSFVLFKNMLPSYTRE 468
K L Q N + Y +PT Y + + VFW+ K V FK + S+ R+
Sbjct: 47 KFLEALQLNHNYYEMLPTYWSPYLHMIANNVFWR-TKNTAFVAVEFKYLYKSFDRD 101
>01_06_0192 +
27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 43 NGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGIL 156
NGDE+P +NN T + + + LL EQ + E L
Sbjct: 306 NGDELPCNENNAEDGTGSSHEHEHLLVQNEQTVEESNL 343
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 409 KRVMNSFVLFKNMLPSYTREELDFPG 486
++V+N+ L N PSY + +D PG
Sbjct: 1072 EQVVNTIYLHDNSFPSYLPKSMDLPG 1097
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,081
Number of Sequences: 37544
Number of extensions: 272664
Number of successful extensions: 682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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