BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_O04 (520 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 33 0.19 SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0 SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088) 29 3.0 SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0 SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3 SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3 SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4) 28 5.3 SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3 >SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) Length = 590 Score = 32.7 bits (71), Expect = 0.19 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 375 SSVHIESSGNVRVLVHIILIVTQHFSEHCHHMEH 274 SS+ SS ++ ++ HII+I+T + H HH H Sbjct: 394 SSLTSSSSPHLSIITHIIIIITPLANHHSHHHHH 427 >SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 275 Score = 28.7 bits (61), Expect = 3.0 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 489 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 394 D+R KF AS R FE H R+ HY P+ Sbjct: 2 DSRGSKFFASSFR--TFENHRRISSGRHYFPK 31 >SB_19631| Best HMM Match : zf-CCHC (HMM E-Value=0.0088) Length = 329 Score = 28.7 bits (61), Expect = 3.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 316 NQYNMDKYTYVPTALDMYTTCLRDPVFWKIM 408 NQ NM ++ VPT ++ TCL +F +M Sbjct: 290 NQCNMSEHYRVPTRSEITKTCLEPNIFQNLM 320 >SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 479 Score = 28.3 bits (60), Expect = 4.0 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 113 CF*MMLSR*SAKES*QAKSNVVMEP*SI*RNPKTWKCL 226 C ++L + +AKES + +N EP N K W CL Sbjct: 139 CKRVLLKKDNAKESMEGLTNACKEPLQEKANQKMWNCL 176 >SB_21845| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 234 Score = 27.9 bits (59), Expect = 5.3 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 489 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 394 D+R KFLA R FE H R+ HY P+ Sbjct: 2 DSRGSKFLAGSFR--TFENHRRISSDRHYFPK 31 >SB_607| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 77 Score = 27.9 bits (59), Expect = 5.3 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 489 DTREIKFLASITRQHVFEKHERVHDAFHYLPE 394 D+R KF AS R FE H R+ HY P+ Sbjct: 2 DSRGSKFFASSFR--TFENHRRISSDRHYFPK 31 >SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4) Length = 152 Score = 27.9 bits (59), Expect = 5.3 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Frame = -2 Query: 351 GNVRVLVHIILIVTQHFSEHCHHMEH-FGIVIGHIHATEDKSGKH 220 G + + + + IVT H +H HH H G +G + KS +H Sbjct: 10 GVIIIAISTVAIVTGHLQQHHHHHFHQCGHYLGLNYPFVPKSSRH 54 >SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3176 Score = 27.1 bits (57), Expect = 9.3 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 189 DQSEETRRRGNACQTYPRWHECGQ*RCQNVPYDDNVQKNAELQSV 323 DQ+ E +R A Q+ PR E QN Y+DNV ++ E+Q+V Sbjct: 2317 DQAREMQR---AAQSQPRVSEISA-AVQNT-YEDNVNQDQEMQAV 2356 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,035,460 Number of Sequences: 59808 Number of extensions: 326462 Number of successful extensions: 928 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 920 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1160542895 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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