Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O04
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    31   0.49 
Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   3.5  
Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistan...    27   8.0  
AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistan...    27   8.0  

>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +1

Query: 406 MKRVMNSFVLFKNMLPSYTREELDFPGVKVE 498
           ++ V+N  + FKN+LP+++   LD+ GV ++
Sbjct: 558 LRTVVNEVINFKNLLPAFSANLLDYGGVFIQ 588


>Z79694-7|CAB01964.1|  396|Caenorhabditis elegans Hypothetical
           protein C15A11.7 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 420 HDAFHYLPEYW 388
           HD FHY PEYW
Sbjct: 75  HDFFHYYPEYW 85


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 61  VRQNNFVPVTSENLKLKMLLD-DVEQMIREGILTGKIERRDG 183
           +R     P TS ++K+K + D D+EQM+    LT  +ER  G
Sbjct: 525 LRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILEREGG 566


>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 364 MYTTCLRDPVFWKIMKRVMNSFVLFKNMLPSYTREELDFP 483
           +Y  C+   VFW     V++S   F N+       +LDFP
Sbjct: 145 IYQLCILFLVFWGPATYVLSSVSAFPNITSKVVCMQLDFP 184


>AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
 Frame = -2

Query: 519 HLFRYNAFNFDTREI-----KFLASITRQHVFEKHERVHDAFHYLPEYWIS*ASSVHIES 355
           H++ Y+  NF  R       K L  +++    + +  V       P   I       ++ 
Sbjct: 229 HIYMYDLGNFKHRYTPSSLPKILQKLSKAVCSKCYVEVSANLTEQPILQIDAHLGARVQL 288

Query: 354 SGNVRVLVHIILIVTQHFSEHCHHMEHFGIVIGHIHATEDKSGKHFHVFGFLQIDHGSIT 175
           SGNV ++ H          E  H + H       +H T   + +H  +FG + + +  + 
Sbjct: 289 SGNVSIMFH--------GREQLHDVLHANT---KLHVTLKPTVRHSRIFGDVSLTNVDVN 337

Query: 174 TFDFAC 157
            FD +C
Sbjct: 338 VFDVSC 343


>AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 573

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
 Frame = -2

Query: 519 HLFRYNAFNFDTREI-----KFLASITRQHVFEKHERVHDAFHYLPEYWIS*ASSVHIES 355
           H++ Y+  NF  R       K L  +++    + +  V       P   I       ++ 
Sbjct: 338 HIYMYDLGNFKHRYTPSSLPKILQKLSKAVCSKCYVEVSANLTEQPILQIDAHLGARVQL 397

Query: 354 SGNVRVLVHIILIVTQHFSEHCHHMEHFGIVIGHIHATEDKSGKHFHVFGFLQIDHGSIT 175
           SGNV ++ H          E  H + H       +H T   + +H  +FG + + +  + 
Sbjct: 398 SGNVSIMFH--------GREQLHDVLHANT---KLHVTLKPTVRHSRIFGDVSLTNVDVN 446

Query: 174 TFDFAC 157
            FD +C
Sbjct: 447 VFDVSC 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,028,868
Number of Sequences: 27780
Number of extensions: 249968
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)