Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O04
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58790.1 68416.m06552 glycosyl transferase family 8 protein c...    29   2.5  
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    28   3.3  
At2g01820.1 68415.m00113 leucine-rich repeat protein kinase, put...    28   3.3  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    28   4.3  
At2g06820.1 68415.m00761 expressed protein low similarity to zin...    27   5.7  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    27   5.7  
At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    27   7.6  
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to...    27   7.6  
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral...    27   7.6  
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    27   7.6  

>At3g58790.1 68416.m06552 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8; general stress protein gspA, Bacillus
           subtilis, PIR:S16423
          Length = 540

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -2

Query: 483 REIKFLASITRQHVFEKHERVHDAFHYLPEYWIS*ASSVHIESSGNVRVLVHIILIVTQH 304
           R+I+  AS+T++ + +   +V  A H+   YW       H+ S G  + L  + L +T+ 
Sbjct: 138 RDIRAFASVTKKMLLQMERKVQSAKHHELVYW-------HLASHGIPKSLHCLSLRLTEE 190

Query: 303 FS 298
           +S
Sbjct: 191 YS 192


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 103 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM-LARLILGGMNVANDDAKMF 279
           KL +LL + +QM++EG LT      D +  + +K  D  M   + IL  MN  +   +M 
Sbjct: 508 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDTVMPYLKTIL--MNATDKSKRML 565

Query: 280 HMMTM 294
              +M
Sbjct: 566 RAKSM 570


>At2g01820.1 68415.m00113 leucine-rich repeat protein kinase,
           putative similar to protein kinase TMK1
           gi|166888|gb|AAA32876; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 943

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 378 ASSVHIESSGNVRVLVHIILIVTQHFSE 295
           AS +H+  +GN+ + + ++  VT +FSE
Sbjct: 560 ASDIHVVEAGNLVISIQVLRNVTNNFSE 587


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 49  DEMPVRQNNFVPVTSENLKLKMLLDDV---EQMIREGILTGKIERRDGTMINLKKPED 213
           DEM  +++  VPV   N +LKML D V   ++ + EG     +E       N ++P+D
Sbjct: 193 DEMTFKEDK-VPVLDSNKRLKMLQDPVCGEKKEVNEGTKFEWLESSRIRDANRRRPDD 249


>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 267

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +1

Query: 85  VTSENLKLKMLLDDVEQMIREGIL 156
           +TS ++K+K+LLD ++ +I+E I+
Sbjct: 151 ITSSSVKIKVLLDGLQPLIKETIV 174


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 49   DEMPV-RQNNFVPVTSENLKLKMLLDDVEQMIRE 147
            DE+PV  Q+  + + +EN KLK L+  +E+ I E
Sbjct: 1037 DEVPVIDQSAIIKLETENQKLKALVSSMEEKIDE 1070


>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 25  PKIRLPNGDEMPVRQNNFVPVTSENL 102
           P+ +LP G+ +P R    +P TS +L
Sbjct: 105 PQTQLPRGESVPKRHRENLPATSSSL 130


>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
          Length = 639

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 37  LPNGDEMPVRQNNFVP-VTSENLKLKMLLDDVEQMIRE 147
           +P   E+PV     V  +TSEN KLK L+  ++Q I E
Sbjct: 87  VPVLQEVPVVDTELVEKLTSENEKLKSLVSSLDQKIDE 124


>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
           root primordium (LRP) protein-related similar to lateral
           root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702)
          Length = 252

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 25  PKIRLPNGDEMPVRQNNFVPVTSENL 102
           P+ +LP G+ +P R    +P TS +L
Sbjct: 197 PQTQLPRGESVPKRHRENLPATSSSL 222


>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 115 LLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLARL 234
           +LDD+E+ + +G+ T K   RD  ++      ++E+  RL
Sbjct: 387 ILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELAQRL 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,317,449
Number of Sequences: 28952
Number of extensions: 228859
Number of successful extensions: 636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)