Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_O03
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    32   0.054
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    28   1.2  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   1.5  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.0  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.7  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   4.7  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   6.2  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.2  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +3

Query: 267 DTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEY 446
           D KI    W+ V+ YES+   + L  G L+   ++ T   C      I G P+  R+  Y
Sbjct: 66  DIKIMSSEWIPVL-YESWVQGEDLDDGLLVDKHFLPTLFKCRVCLTNI-GQPERSRIENY 123

Query: 447 NTTNNGPDCMKGTKDCAH 500
              + G  C   T+D  H
Sbjct: 124 VLKHGGTFCPDLTRDVTH 141


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 318 FDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRL 437
           FDH K    G     K   ++ HC+   + I G  +NVR+
Sbjct: 280 FDHSKKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRI 319


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 407 QDCSSDTVCSSEHVLRTDE*ATA*QLHMIKTLIFDHHKPWILGDFCVISTDNFINNGVF 231
           Q C S    SS+ +L  ++   A Q+H  + +  D ++  +  D  V S ++F+NN  F
Sbjct: 108 QSCKSACENSSQSLLNVEQ-QYAQQVHFWEKIRTDIYREGLRSDAAVKSLNDFVNNVSF 165


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
 Frame = +3

Query: 135 PEINPEDMTLNERCSRAV-TAFPLESNNECCGVEDTVVNKIVGG--NDTKITQYPWLVVI 305
           P +NP D+TL ER    + + F  ES  E   V+  +V  ++    ++  I ++ +L+  
Sbjct: 211 PTLNPSDITLMERVVNTIASCFCGESTPE--RVQLQIVKALLAAITSERTIIRHSFLLTA 268

Query: 306 EYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEYNTTNNGPDCMKGT 485
             +++ ++ LLC  S   +   +     V        T  N    E++T N       GT
Sbjct: 269 VRQTY-NIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLN-HEREFSTINMNKSSSNGT 326

Query: 486 KDCAHPVVTAPIEK 527
            D A+  + + + +
Sbjct: 327 PDRANSPIPSQLSE 340


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 262 PPTILLTTVSSTPQHSLLLSSGKAVTALEHLSLRVISSGFISGGGPQHTLNVSGPLQTD 86
           P  I   T S +P ++   +SG  +T+        +S      GGP +T + SGP+  D
Sbjct: 135 PAPINSATASMSPANN---TSGNNITSPNVRGELDMSGNIAMSGGPTNTASTSGPVPHD 190


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 542 WMWNSFFYRSSNNGMCT 492
           WMWNSF   S  NG  T
Sbjct: 421 WMWNSFRGASDENGEVT 437


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 418 RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 504
           R+  CV ESI    ++ T  K+P T H+P
Sbjct: 31  RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = -3

Query: 361 ELMSEPPHSSFI*SKLSYSITTSHGYWVIFVSFPPTILLTTVSSTPQH 218
           E +S+   S  +  K+     T+HG W   ++ P ++ ++ ++  P++
Sbjct: 469 EKLSQWYKSDTLLGKIDKEADTNHGTWNFLLNLPLSLTISHITPLPEN 516


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 84  VERNPFYSFWSYLASYK*YAHSCTNRHK 1
           V R  FYS +SY +S++  A+S   RH+
Sbjct: 151 VRRPRFYSSYSYPSSHQDPAYSSFKRHR 178


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 557 VGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQ----DCSSD 390
           +G  +  WN ++Y+  +N    +FG    ++     +I+  T +   S  +    + SSD
Sbjct: 253 LGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSD 312

Query: 389 TVCSSEHVLR 360
           T   S+ +LR
Sbjct: 313 TNLESDFLLR 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,675
Number of Sequences: 5004
Number of extensions: 55880
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)