Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_O02
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 30 1.3
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 30 1.3
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 30 1.3
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 29 2.3
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 2.3
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 28 4.1
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 4.1
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 4.1
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 28 4.1
U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical pr... 27 9.4
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 39 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 188
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 39 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 188
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 39 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 188
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 45 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 203
K+ Q+ ++L K++ H + STS+ P +TF+ P FE + S +T
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 415 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 266
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +2
Query: 209 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 376
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 377 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDYGF 523
+++ + + +L + +V S+ ++D K++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 114 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 239
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 114 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 239
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +2
Query: 209 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 376
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 377 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVXKIFLGPKYNDYGF 523
+++ + + +L + +V S+ ++D K++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical
protein C01F1.5 protein.
Length = 308
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 113 KPFDKHTFMPSALDFYQTALRDPAFYQLYNR 205
KP K F PS DF + LRD AF Q+ R
Sbjct: 56 KPVQKVYFWPSLTDFEKNVLRD-AFAQIGRR 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,027
Number of Sequences: 27780
Number of extensions: 247593
Number of successful extensions: 707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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