Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N24
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.063
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.11 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.34 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    28   0.59 
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.4  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   1.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   3.1  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   4.1  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   5.5  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    24   7.2  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   9.6  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   9.6  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    24   9.6  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    24   9.6  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 31.1 bits (67), Expect = 0.063
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 116 FTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENN 235
           ++GH         +T   NHF+ +GH    +T  +N+ NN
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 325 PPFARQLGNIPSTSHSRVYSPLHLLFIGLFVVLR 224
           P + R+L    S S+SR  SPLH LF+ L + ++
Sbjct: 762 PSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIK 795


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 258 IYCLLDFLLFSVFTNFVTIFLEC 190
           ++CL D+  FS+F+ F+ I LEC
Sbjct: 211 LWCLDDYWYFSLFSMFMIIALEC 233


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 92  NFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNKQ 253
           N + D +    H  K        +  +HFDPS + +K+V+      N K S+ Q
Sbjct: 18  NEEDDDYYSNAHSEKSEDHSNHIK-VSHFDPSSYKQKLVSVRETQRNRKFSSLQ 70


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 77  EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHS 196
           +YD++N DH  H    H     +  EA          GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 151 GGHRTHESLRPLWTFQKDRHEVSEYGE 231
           GG R   SL   WTFQ  +H    Y +
Sbjct: 69  GGEREGSSLTHSWTFQPGKHNQRLYSD 95


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 199 KDRHEVSEYGEQQKVQ*TIDVTVNKHDYGL*KEYY 303
           +D   ++E  E  +++   ++ VN HDY   +E++
Sbjct: 54  QDEFSLTENEENNEIETNEEMHVNSHDYAFPQEFF 88


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 147 SGRPPNTRITSTPLDIPE 200
           +GR   T ITS PLD PE
Sbjct: 640 AGRTTITNITSEPLDTPE 657


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 273 TRLWLVEGILPSCLAKGGRYG 335
           T  WL EG+ P C+ +  ++G
Sbjct: 440 TESWLKEGLRPRCITRDLKWG 460


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 160 RTHESLRPLWTFQKDRHEVSEYGEQ 234
           R  E++  L +F +DR+EV+ Y E+
Sbjct: 23  REREAVADLLSFLEDRNEVNFYSEE 47


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 255 YCLLDFLLFSVFTNFVTIFLECPEGSK 175
           Y +LDF  F   +  +T ++E P+G +
Sbjct: 529 YKVLDFHPFDPVSKKITAYVEAPDGQR 555


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 41  FTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKRE 154
           FT+    E   DE  +Y F +DK+I      K +  R+
Sbjct: 679 FTSKKQEEIPVDELFFYRFFNDKYIKGKQARKTKVDRD 716


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 41  FTNVTMSEAFFDEYDYYNFDHDKHIFTG 124
           F+ VT+ +AFFD+   Y F  D  + TG
Sbjct: 48  FSMVTLKKAFFDK---YIFQPDSVLLTG 72


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 120 PDTEVNSVPSGRP--PNTRITSTPLDIPE 200
           P ++VN V +     PN    STP+D+PE
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPE 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,664
Number of Sequences: 5004
Number of extensions: 29941
Number of successful extensions: 87
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)