Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N23
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   1.4  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   5.8  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   5.8  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   7.6  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    25   7.6  

>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 354 TMNFPEAHVPSNGDYIVMAE-YSPVNIRLIN 265
           T  FP   VPS G ++V+ E Y P NI +++
Sbjct: 304 TAQFPRMVVPSAGVHVVLPEYYCPPNIGILD 334


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 170 PTPST--KDLQCLSWNPFYTRVYQFQQSC 90
           PT S   K L+CL W     +V + Q SC
Sbjct: 573 PTESLEYKKLRCLRWKSLTEQVVELQPSC 601


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 45  DIYKYFLILQYFCLKTALLK 104
           D+YKY L+LQ   L  ALL+
Sbjct: 244 DVYKYDLVLQIRFLNRALLR 263


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 99  AKLFLNRNTVILRSICRYQYILQSDN 22
           AKL++NR TV+LR     + +  SDN
Sbjct: 261 AKLYMNRATVLLRLKRPEEALSDSDN 286


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 33  VVYTDIYKYFLILQYFCLKTALLKLIYSGIKGIPTQALQVFSAGC 167
           V+Y +   Y + +   C+  +LL   ++    IPT + ++++ GC
Sbjct: 93  VLYEETVGY-VSMDTLCIAISLLDRCFTVKPTIPTTSFKIYAIGC 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,035
Number of Sequences: 5004
Number of extensions: 39600
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)