Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N23
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 29 1.4
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 28 4.3
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 28 4.3
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 27 5.7
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818... 27 5.7
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 27 10.0
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 27 10.0
04_04_1125 + 31085106-31085714 27 10.0
02_02_0637 - 12491706-12492575,12492580-12492657 27 10.0
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 348 NFPEAHVPSNGDYIVMAEYSPVNIRLINMQQR 253
N PE++VPS GD I++++ P +I I R
Sbjct: 74 NRPESYVPSVGDIIILSDVKPEHISDITRNGR 105
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 266 ICSSVSSPCSARVPPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFYTRVYQFQQSC 90
+ SS+S P S PP+F ++ + Y+P T +Q +W+ F+ + Q C
Sbjct: 702 VLSSLSVPLSFDWPPVFRGYGKLNQNNALGYDPL-YTPQMQSSAWSGFHAPLIQRGSIC 759
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 317 PLLGTWASGKFIVIRYRLYWSSNFRSICLFV 409
P G SG F+V+ + ++WSS+ I L V
Sbjct: 39 PYEGDTVSGNFVVVDHDIFWSSDHPGIDLTV 69
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 180 PLQPYTQH*RLAVLELESLLYQSISISAKLFL-----NRNTVILRSICRY 46
P+QP + +L +LEL L YQ I+ K+F N N +RS CR+
Sbjct: 1457 PIQPLPESLQLHLLELYELHYQMITF-GKVFCTKSKPNCNACPMRSECRH 1505
>03_02_0406 +
8182870-8184262,8184376-8184452,8184809-8184920,
8185064-8185071,8185633-8186217
Length = 724
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 271 N*YAAAFLALVAPVCHQYSGALRELALRATPPTTLHPALKTCSA 140
N ++ +A V CH S E+ L A PP+ L + CSA
Sbjct: 671 NDHSEPLMASVEHNCHDQSS--EEMKLEADPPSELETEAENCSA 712
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 259 AAFLALVAPVCHQYSGALRELALRATPP 176
AA AL V H+YS A+R A A PP
Sbjct: 22 AAAEALSLDVHHRYSAAVRRWAAAAAPP 49
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 260 SSVSSPCSARVPPIFWCPSR-VGAPSDAPYNPTPS 159
SS+++P +R PP PS APSDAP P P+
Sbjct: 58 SSIAAPSPSRAPPP--PPSHHERAPSDAPPPPPPA 90
>04_04_1125 + 31085106-31085714
Length = 202
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -1
Query: 248 SPCSARVPPIFWCP--SRVGAPSDAPYNPTPST 156
+P + PP W P + P+ P+ PTP+T
Sbjct: 52 TPATPTTPPTPWTPPPATPTPPTPTPWTPTPAT 84
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -1
Query: 281 IFG*LICSSVSSPCSARVPPIFWCPSRVGAPSDAPYNPTPSTK 153
++ L+CS+ + CSA P W G+P P S +
Sbjct: 76 LYNLLLCSTCRAGCSASPPASSWICGTEGSPPTRSRTPRSSRR 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,352
Number of Sequences: 37544
Number of extensions: 246672
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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