Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N23
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 35   0.039
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  35   0.039
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   1.9  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       28   3.4  
SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)                   28   4.4  
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)                    28   4.4  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   28   4.4  
SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_23852| Best HMM Match : DNA_pol_A (HMM E-Value=0)                   28   4.4  
SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)                      27   5.9  
SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06)              27   7.7  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        27   7.7  
SB_30524| Best HMM Match : TPR_2 (HMM E-Value=2.9e-36)                 27   7.7  
SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)                 27   7.7  
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)                   27   7.7  

>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 260 SSVSSPCSARVPPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFYTRVYQFQQS 93
           SS  SP  +R+P +   P++ G P+     P PST+D +     P  TR Y   Q+
Sbjct: 310 SSPQSPTKSRIPLMIKSPAKSGRPTPQASRPRPSTQDFE----PPQLTRYYSQDQA 361


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 260 SSVSSPCSARVPPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFYTRVYQFQQS 93
           SS  SP  +R+P +   P++ G P+     P PST+D +     P  TR Y   Q+
Sbjct: 449 SSPQSPTKSRIPLMIKSPAKSGRPTPQASRPRPSTQDFE----PPQLTRYYSQDQA 500


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -1

Query: 245 PCSARVPPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFYTRVYQFQQS 93
           P +A   P    PS   AP  AP    PST      S  P+Y +  Q Q S
Sbjct: 108 PAAAAPAPAPAAPSAAAAP--APVRSVPSTSPSSVRSATPYYPQTQQQQSS 156


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 15 YYYYHFVVYTDIYKYFLILQYFC 83
          YYYY++  Y   Y Y+    Y+C
Sbjct: 11 YYYYYYYYYYYYYYYYYYYYYYC 33



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 15 YYYYHFVVYTDIYKYFLILQYF 80
          YYYYH+  Y   Y Y+    Y+
Sbjct: 4  YYYYHYYYYYYYYYYYYYYYYY 25



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 15 YYYYHFVVYTDIYKYFLILQYFC 83
          YYYY++  Y   Y Y+    Y C
Sbjct: 12 YYYYYYYYYYYYYYYYYYYYYCC 34


>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 15  YYYYHFVVYTDIYKYFLILQYFC 83
           YYYY++  Y   Y Y+    Y+C
Sbjct: 273 YYYYYYHYYYYYYYYYYYYYYYC 295


>SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)
          Length = 600

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 VGGVARSANSRRAPEYWWHTG 236
           VGG    A S  APE+W+H G
Sbjct: 434 VGGTMMLACSSNAPEFWFHHG 454


>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
          Length = 440

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = -3

Query: 105 ISAKLFLN----RNTVILRSICRYQYI 37
           I+ KLF++    RNT ILRS C+ QY+
Sbjct: 356 ITRKLFVDFLCFRNTAILRSSCKLQYL 382


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = -3

Query: 105 ISAKLFLN----RNTVILRSICRYQYI 37
           I+ KLF++    RNT ILRS C+ QY+
Sbjct: 409 ITRKLFVDFLCFRNTAILRSSCKLQYL 435


>SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 15 YYYYHFVVYTDIYKYFLILQY 77
          YYYY++  Y   Y Y+ IL++
Sbjct: 11 YYYYYYYYYYYYYYYYAILEF 31


>SB_23852| Best HMM Match : DNA_pol_A (HMM E-Value=0)
          Length = 353

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -3

Query: 339 EAHVPSNGDYIVM-AEYSPVNIRLI 268
           +A +P N DYI++ A+YS + +R+I
Sbjct: 206 KAFIPRNDDYILLAADYSQIELRII 230


>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 ASGKFIVIRYRLYWSSNFRSICLFVILYNKSMWKSLNLKIHKV 463
           +S  FI IRY      + +S+ +F+I+Y      S  +KI K+
Sbjct: 138 SSSSFIKIRYHHRLLKSSKSVIIFIIIYRNHRNPSSFIKIIKI 180


>SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)
          Length = 335

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 6   SRSYYYYHFVVYTDIYKYFLILQYF 80
           + SYYYY++  Y   Y Y+    Y+
Sbjct: 263 AHSYYYYYYYYYYYYYYYYYYYYYY 287


>SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06)
          Length = 364

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 VGGVARSANSRRAPEYWWHTG 236
           +GGV     S  APE+W+H G
Sbjct: 241 IGGVMSLDASANAPEFWFHHG 261


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 371 YWSSNFRSICLFVILYNKSMWKSLNLKIHKVT 466
           YW   F  ICL + + N   W +L+  +H  T
Sbjct: 496 YWGVPFDQICLGMKVGNNLKWLTLDYTLHTCT 527


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 266 ICSSVSSPCSARVPPIFWCPSRVGAPSDAPYNPTPS 159
           IC   S+ C++  PP F   ++  A   A Y P P+
Sbjct: 596 ICEESSTKCTSCQPPNFRLGNKCQADCGAGYKPAPT 631


>SB_30524| Best HMM Match : TPR_2 (HMM E-Value=2.9e-36)
          Length = 451

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 27  HFVV--YTDIYKYFLILQYFCLK--TALLKLIYSGI 122
           HF+   Y +  +YFL+ +Y+  K  T LL  IY GI
Sbjct: 317 HFIRLNYKEALEYFLLAEYYFTKTDTHLLSKIYQGI 352


>SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)
          Length = 908

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 27  HFVV--YTDIYKYFLILQYFCLK--TALLKLIYSGI 122
           HF+   Y +  +YFL+ +Y+  K  T LL  IY GI
Sbjct: 282 HFIRLNYKEALEYFLLAEYYFTKTDTHLLSKIYQGI 317


>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
          Length = 546

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 314 SPLLGTWASGKFIVIRYRLYWSSNFRSICLF 406
           S L G W SG  +  R + Y+ S  RS CL+
Sbjct: 252 SQLEGAWQSGTELTERRKRYFVSPLRSSCLW 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,880
Number of Sequences: 59808
Number of extensions: 296132
Number of successful extensions: 966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)