Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N23
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z75544-5|CAJ28586.1|  112|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -1

Query: 269 LICSSVSSPCSARVPPIFWCPSRVGAPSDAPYNPTPSTKD 150
           L+ SS SS  S+ V      PS  G P+     PTPST +
Sbjct: 465 LVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSN 504


>Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical protein
            R13H4.4b protein.
          Length = 930

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = -3

Query: 414  KITNRHIDLKLDDQYSL*RITMNFPEAHVPS-NGDYIVMAEYSPVNIRLINMQQRF*P-- 244
            ++ N  +   LD   SL +   N   A V +    YI   ++   N   + ++ R  P  
Sbjct: 808  QVGNELVVSALDSAMSLIQTARNLLTAVVQTVKAAYIASTKFRRPNANSVRVEWRMAPPK 867

Query: 243  ---L*RPCATNILVPFESWRSERRPLQP 169
               L RP   N ++      SERRPLQP
Sbjct: 868  KQPLIRPQKNNAIIRVCRRASERRPLQP 895


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 380 SNFRSICLFVILYN 421
           SNFR +C+ ++LYN
Sbjct: 904 SNFRDLCIIIVLYN 917


>Z75544-5|CAJ28586.1|  112|Caenorhabditis elegans Hypothetical
           protein K02A11.4 protein.
          Length = 112

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 69  LQYFCLKTALLKLIYS-GIKGIPTQALQVFS 158
           +QY CL +AL  L+ S GI  IP   + V+S
Sbjct: 1   MQYICLVSALFVLVLSRGIPTIPQPRIDVWS 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,874
Number of Sequences: 27780
Number of extensions: 219658
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)