Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N23
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.6  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 330 VPSNGDYIVMAEYSPVNIRLIN 265
           + S  DY  + EYS  ++RLI+
Sbjct: 285 IDSKPDYRELTEYSVTSVRLIS 306


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 204 ESWRSERRPLQPYTQH*RLAVLELESLLYQSISISAKLFLNRN 76
           E+W  ++   Q Y +  R  +LE E  +  S +   KL L R+
Sbjct: 41  EAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERS 83


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -1

Query: 221 IFWCPSR-VGAPSDAPYNPTPSTKDLQCLSWN 129
           + W  S  +G+P     N TP     QCL +N
Sbjct: 309 LVWAISAAIGSPIVLGLNNTPDRTPDQCLFYN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,213
Number of Sequences: 438
Number of extensions: 2903
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)