Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N23
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55580.1 68414.m06361 scarecrow transcription factor family p...    27   4.8  
At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein...    27   6.3  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    27   6.3  

>At1g55580.1 68414.m06361 scarecrow transcription factor family
           protein contains Pfam profile PF03514: GRAS family
           transcription factor
          Length = 445

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -3

Query: 96  KLFLNRNTVILRSICRYQYILQSDNNNN 13
           ++ ++ +TV   S+C+ Q++ ++ NNN+
Sbjct: 112 EMTMSNSTVFTSSVCKEQFLFRTKNNNS 139


>At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein
           low similarity to SP|Q56239 DNA mismatch repair protein
           mutS {Thermus aquaticus; contains Pfam profile PF00488:
           MutS domain V
          Length = 795

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 197 QLSKGTRILVAHGRYKG*KRCCI 265
           Q+SKGTR+LV  G   G K  C+
Sbjct: 428 QISKGTRVLVITGPNTGGKTICL 450


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 227 PPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFY 120
           PP+  CP    +P    Y  TPS ++       P+Y
Sbjct: 566 PPVVNCPPTTQSPPPPKYEQTPSPREYYPSPSPPYY 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,729,500
Number of Sequences: 28952
Number of extensions: 200350
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)