Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N22
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   4.9  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.5  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   8.5  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   8.5  

>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 338 TSILLLG-SRXXXXXXXXXLMKTKGNSF 258
           TS+LLLG SR          +K KGN+F
Sbjct: 9   TSLLLLGGSRLALADSASSAIKIKGNAF 36


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 264 VSFCFH*ILQFNSIVVSRTQQQDRG 338
           ++F F  ILQ N ++  + ++QD+G
Sbjct: 16  ITFLFSLILQDNGVLARKAKKQDKG 40


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 415 LYLNTISAFLYT--LPHKSVFYGRSFV 489
           L+ N ++A LY     H SVF+G SF+
Sbjct: 32  LFFNCLAATLYLHGYKHSSVFFGISFL 58


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 277 KQKETVSFSDQQKIIQVSQTICKL*CVTNLGVIIVYNIKKRR 152
           ++K T  FS+  ++ Q S T   L   TN+G+ ++  ++  R
Sbjct: 100 RRKNTNCFSESSQVDQYSVTETNLQYATNIGLNLLQQLRYLR 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,646
Number of Sequences: 5004
Number of extensions: 32881
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)