Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N22
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0218 + 1856104-1856700,1856814-1857452                           28   4.9  
11_04_0167 + 14382976-14385244,14389373-14389842                       27   8.6  
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    27   8.6  

>01_01_0218 + 1856104-1856700,1856814-1857452
          Length = 411

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 409 HSLYLNTISAFLYTLPHKSVFYGR 480
           +S+Y+++   F  +LP  SVFYGR
Sbjct: 171 YSIYVHSYPPFAASLPTDSVFYGR 194


>11_04_0167 + 14382976-14385244,14389373-14389842
          Length = 912

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 52  HNLSGFIKLSVWQ*STPPWYSPYAISNCS 138
           H L+    L++     PPW  P AI+NCS
Sbjct: 133 HGLTSLQYLTMENLPLPPWPVPDAIANCS 161


>03_02_0349 -
           7722461-7723069,7723494-7724221,7724281-7724641,
           7724751-7725072,7725183-7725661,7726157-7726430,
           7726598-7726884,7726966-7727388,7727545-7727890,
           7728011-7728328,7729817-7731081
          Length = 1803

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 366 LSSGIPIVTNLDPVAGFEILLLN*IVIFNENKRKQFRFLIN 244
           +S+G+    +L+    +++ L   I +FN   RK   FLIN
Sbjct: 622 MSNGVSEAASLEQRRAYKMELQEGISLFNRKPRKGIEFLIN 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,286
Number of Sequences: 37544
Number of extensions: 178354
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)