Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N22
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containi...    28   3.1  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    28   4.1  
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    27   9.5  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    27   9.5  

>At2g34370.1 68415.m04208 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 469

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 397 RVKTHSLYLNTISAFLYTLPHKSVFYGRSFVVCR 498
           R ++H+L   TI++ L  +  + ++  RSFV CR
Sbjct: 31  RAQSHNLITKTITSSLQDVLTRPIWQNRSFVQCR 64


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 390  QSNLIKYHLSSGIPIVTNLDPVAGFEILLLN*IVIFNEN 274
            ++NLIKY   SG   VT+L  +A +  +    I  +NEN
Sbjct: 991  KNNLIKYDRKSGHFQVTDLGRIASYYYISHGTIAAYNEN 1029


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 421 DIANGSLPVFSIELNKIPSQQWDPNRNQPRSCCW 320
           D    +L    I L  +P+Q  D N+NQ   C W
Sbjct: 28  DAQGDALFALRISLRALPNQLSDWNQNQVNPCTW 61


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
            putative similar to SP|O75643 U5 small nuclear
            ribonucleoprotein 200 kDa helicase {Homo sapiens};
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2171

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 390  QSNLIKYHLSSGIPIVTNLDPVAGFEILLLN*IVIFNEN 274
            ++NL+KY   SG   VT+L  +A +  +    I  +NE+
Sbjct: 990  KNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEH 1028


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,385,425
Number of Sequences: 28952
Number of extensions: 159747
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)