Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N21
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.60 
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    28   1.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   5.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.4  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.8  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   9.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.8  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   9.8  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   9.8  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 267 LYSGIIRGIVFNFSRSSRSVIFLTRSGYRDDNSLVSQGSSLILYKHTVPL 118
           L+SG++R I    + S+R       S     + ++S  +SLIL+++ VP+
Sbjct: 499 LFSGVLRSIYSAQNNSARVFELSKNSNTAPAHGIISIFTSLILFQNLVPI 548


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/24 (50%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = +2

Query: 167 KELSSLYPDLVKNMTDR-LDLEKL 235
           K++SSL+PD++KN+  R + L+KL
Sbjct: 49  KDVSSLFPDVLKNLATRDITLKKL 72


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 66  LEYIVISTESDDLFAIPAMVLYVYTILKKILVKPKNC 176
           L YIV   E++D        L    ILKK+L   +NC
Sbjct: 846 LGYIVSLIENNDYAGFNVKRLMKMQILKKLLTAMRNC 882


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 180  DDNSLVSQGSSLILYKHTVPLRG*QIGRPILSILQCTLMSFLKLMFSRLNGLLTLR 13
            +++S V   +SL + KHT PLR      P+ S+ +    S   + F+  +G + LR
Sbjct: 2127 NEDSSVLGWTSLKVSKHTDPLRATSDFIPLFSMQRWN--SITSMFFAHASGSIALR 2180


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = +2

Query: 242  IPRIIPLYRDPRSSPRFFNYTWATFADNL*SMCLFYFVVVIVKICALCTSYLIFFFRNFQ 421
            I R  P Y  P ++    N T +         C  Y  + +V   ++   Y    +RN+ 
Sbjct: 1159 IVRREPWYIPPPANSSDTNITNSDVTALFLISCFQYIFIGVV--LSIGPPYREKVWRNYS 1216

Query: 422  FAKGYVILK*LMWKLYFLKNSDSFF 496
            F    V+L  L  KL  L+N  +FF
Sbjct: 1217 FTAVVVVLLILTVKLIRLQNHKNFF 1241


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 510 IELNEKNESEFFRKYNFHI 454
           IE NEK +++F + YN +I
Sbjct: 131 IEANEKQKTDFEKSYNINI 149


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 386 TSYLIFFFRNFQFAKGY 436
           TSY +F+ RNF  AK Y
Sbjct: 244 TSYELFYDRNFPLAKKY 260


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 281 SPRFFNYTWATFADNL*SMCLFY 349
           SP+ F   + TFA ++  +CLFY
Sbjct: 104 SPKSFFLVYLTFAVSVSCLCLFY 126


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 199 NQVWIQR*QFFGFTRIFFNIV*TYSTIAGIANRSSDSV 86
           N+ W Q+   FG T  F+N +  ++   GI   + + +
Sbjct: 595 NESWWQKLNSFGITSSFYNEIERFTKSTGIEEITENGI 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,290
Number of Sequences: 5004
Number of extensions: 46309
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)