Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N21
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336...    29   3.3  
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501...    28   4.3  
03_06_0398 + 33629421-33629633,33629960-33630063,33630140-336301...    27   7.5  
06_01_0063 - 534138-534605                                             27   10.0 
01_06_1499 + 37794215-37794317,37794426-37794643,37794735-377952...    27   10.0 

>12_01_0427 +
           3359766-3360092,3360425-3360541,3360738-3360893,
           3361009-3361144,3361303-3361436,3361832-3361987,
           3362496-3362594,3362817-3362932,3363358-3363532,
           3363807-3363885,3363989-3364132,3364206-3364319,
           3364415-3364536,3364929-3365011,3365091-3365188,
           3365300-3365420,3366237-3366333,3366782-3366874,
           3366948-3367053,3367395-3367540,3367617-3367697,
           3367838-3367921,3367997-3368132,3368334-3368400,
           3368943-3369102
          Length = 1048

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 275 RSSPRFFNYTWATFADNL*SMCLFYFVVVIVKICALCTSYL 397
           RSSP     +W+TF D      L YF V   +I  L   Y+
Sbjct: 177 RSSPLIQKISWSTFLDEARKPILHYFTVAAKEIAELPGFYV 217


>02_03_0412 -
           18749430-18749587,18749696-18749857,18750062-18750194,
           18751640-18751744,18751818-18751935,18752232-18752320,
           18752407-18753660,18753785-18753831,18754285-18754339,
           18754783-18754884
          Length = 740

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 528 KINFKPIELNEKNESEFFRKYNFHISHFSITYPF 427
           +I+ K +EL    +SE  RK   ++SHFS+T  F
Sbjct: 521 RIHGKILELETVTQSEATRKRYRYLSHFSLTTTF 554


>03_06_0398 +
           33629421-33629633,33629960-33630063,33630140-33630194,
           33630293-33630341,33630427-33630599,33630731-33630808,
           33630923-33630985,33631400-33631525,33631667-33631795
          Length = 329

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 107 CYPRNGTVCLYNIKEDPCETKELSSLYPDLVK-NMTDRLDLEKLK 238
           C+P N  V  Y +    CE  ELS    +L   N T   +L+KLK
Sbjct: 231 CHPPNYPVTFYGLTNQECE--ELSQKVTELTAVNSTLMTELDKLK 273


>06_01_0063 - 534138-534605
          Length = 155

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 YHYIETLDLHLVFLITHGRRLQT 323
           Y  +  L LHL+FL+TH RRL +
Sbjct: 8   YSGVPRLLLHLLFLLTHLRRLSS 30


>01_06_1499 +
           37794215-37794317,37794426-37794643,37794735-37795201,
           37795273-37795363,37795376-37796062
          Length = 521

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = +2

Query: 278 SSPRFFNYTWATFADNL*SMCLFYFVVVIVKICALCTSYLIFFFRNFQFAKGYVILK 448
           S+ R    +W  F+DNL    L YF  ++  I AL    L+F +    FAKGYV  K
Sbjct: 465 SATRSRGESW--FSDNLNRAHLDYFYWLLAGISAL--DVLVFLY----FAKGYVYTK 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,593,014
Number of Sequences: 37544
Number of extensions: 241593
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)