Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N20
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    46   3e-06
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   1.0  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   7.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   9.7  

>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 25/70 (35%), Positives = 42/70 (60%)
 Frame = +2

Query: 5   GKEYDIPEFSPSDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNL 184
           GK+YD+ E  P+++ + LK  + + T V PERQK++    +G    D+  L  + +KPN 
Sbjct: 10  GKKYDL-EIEPNETGSTLKHQLYSLTQVPPERQKVI---VKGGQLKDDVLLGSVGIKPNA 65

Query: 185 KIMMMGSLEE 214
            ++MMG+  E
Sbjct: 66  TLLMMGTAGE 75


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 502 NPHMLTSGTHEEMVSLVHTQFLRQICDQIMYNLYLK 395
           N H LT G+    +SL  +QF R  CD + YN+ +K
Sbjct: 895 NGH-LTVGSDAVCLSLGDSQFHRLSCDSVGYNIEVK 929


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 140 TDNCTLSDLNLKPNLKIMMMGSLEEAIQ 223
           T  C+ SDLN++ + K ++ GS+  A++
Sbjct: 120 TIGCSRSDLNVEASAKGLVFGSIHIALE 147


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 355 NLLNQPRPGKKLLVLDIDYTLFDHRSVAETG 447
           N+++ P P  ++L  + D+++F   SVA  G
Sbjct: 149 NIIDLPPPALEILSSEKDFSIFHRLSVAWVG 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,491
Number of Sequences: 5004
Number of extensions: 33668
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)