Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N20
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1524 - 37980345-37980587,37980671-37980845,37980938-379810... 111 3e-25
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 42 2e-04
01_06_1230 + 35575840-35576020,35576122-35576170,35576365-355764... 36 0.028
08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137 31 0.61
03_06_0688 - 35559239-35559433,35560455-35560792,35561357-355617... 29 1.8
06_03_0709 - 23759162-23759455,23759681-23759761,23759847-237599... 29 3.2
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 29 3.2
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652... 27 7.5
02_04_0476 + 23248222-23248495,23249558-23249790 27 7.5
>01_06_1524 -
37980345-37980587,37980671-37980845,37980938-37981001,
37981080-37981194,37982262-37982406,37984671-37984981
Length = 350
Score = 111 bits (268), Expect = 3e-25
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Frame = +1
Query: 310 DIFS-KINKRVRDYQINLLNQPRPGKKLLVLDIDYTLFDHRSVAETGYELMRPFLHEFLT 486
D++ K+ +R Y+I +LN R GKKLLVLDIDYTLFDHRS AE ELMRP+LHEFL+
Sbjct: 138 DVYKQKLKRRASQYKIKILNPCRKGKKLLVLDIDYTLFDHRSAAENPIELMRPYLHEFLS 197
Query: 487 SAYVDYDLVIWSATGMTWI 543
+AY +YD++IWSAT M W+
Sbjct: 198 AAYSEYDIMIWSATSMKWV 216
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = +2
Query: 5 GKEYDIPEFSPSDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNL 184
G +Y + D++ LK I TGV P+RQKLL KF+ D+ +S + KPN+
Sbjct: 40 GNDYTVRVVG-DDTLGELKRRICEVTGVLPKRQKLLYPKFKLNECKDSELISSIPFKPNV 98
Query: 185 KIMMMGSLEEAI 220
KI M+G++E+ I
Sbjct: 99 KINMIGTVEDEI 110
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 26 EFSPSDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLKIMMMGS 205
E S + K + TGV PERQK++ +G + D+ S L +K K+MM+G+
Sbjct: 17 EIDTSQPPVVFKTQLYTLTGVPPERQKIM---VKGGILKDDADWSTLGVKDGQKLMMIGT 73
Query: 206 LEEAIQGAQTKP 241
+E ++ + P
Sbjct: 74 ADEIVKAPEKGP 85
>01_06_1230 +
35575840-35576020,35576122-35576170,35576365-35576441,
35576883-35577145,35577241-35577387,35578569-35578766
Length = 304
Score = 35.5 bits (78), Expect = 0.028
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 56 LKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLKIMMM 199
LK + ATGV PERQ+L F+GK +DN L +K K++++
Sbjct: 105 LKGVLTQATGVEPERQRLF---FRGKEKSDNEFLHTAGVKDGAKLLLL 149
>08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137
Length = 174
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 26 EFSPSDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATD-NCTLSDLNL 172
E PSD++ +K I++ G+R ++Q L+++ K D TL+D ++
Sbjct: 107 EVRPSDTIDDVKAKIQDKVGIRSDQQHLVDVSAGSKQLDDGGSTLADYDI 156
>03_06_0688 -
35559239-35559433,35560455-35560792,35561357-35561785,
35562014-35562110,35562314-35562438,35562758-35562908
Length = 444
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 400 DIDYTLFDHRSVAE-TGYELMRPFLHEFLTSAYVDYDLVIWSATGMTWIE 546
D D+T H ++ E T Y RP+L EFL + ++++I++A+ + E
Sbjct: 280 DSDFTFPVHFNLREHTIYVRCRPYLKEFLETVASMFEIIIFTASQSIYAE 329
>06_03_0709 -
23759162-23759455,23759681-23759761,23759847-23759948,
23760068-23760163,23760256-23760315,23760496-23760549,
23760657-23760695,23761102-23761179,23761476-23761529,
23761797-23761880,23763447-23763475,23763602-23763659
Length = 342
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 504 IIHIC*RQELMKKWSH*FIPSFCDR 430
++H C R EL+K H +P FC R
Sbjct: 234 VLHGCGRDELLKIMDHSSLPHFCQR 258
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 17 DIPEFSPSDSVAMLKIAIENATGVRP-ERQKLLNIKFQGKVATDNCTLSDL 166
+IP+ +PS S+++ I+ N +G P L QG + C LS L
Sbjct: 624 NIPDIAPSASLSIFNISFNNLSGPLPLNMHSLACNSIQGNPSLQPCGLSTL 674
>03_02_0218 -
6522330-6522458,6523257-6523328,6523555-6523707,
6524370-6524543,6525655-6525835,6525923-6525990
Length = 258
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 475 HEEMVSLVHTQFLRQICDQIMYNLYLKLKASCRAEAGLV 359
+E LV ++C Q+ Y + K +SCR +GLV
Sbjct: 74 NESSCHLVMEDATGRVCIQVGYLKWTKRSSSCRCSSGLV 112
>02_04_0476 + 23248222-23248495,23249558-23249790
Length = 168
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 56 LKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLKIMMM 199
LK+ + TG+ P Q+LL F+GK D L + ++ K++++
Sbjct: 94 LKVRLSMVTGLEPREQRLL---FRGKEREDTDHLHMVGVRDKDKVLLL 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,610
Number of Sequences: 37544
Number of extensions: 196510
Number of successful extensions: 505
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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