Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N20
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)            132   2e-31
SB_17036| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.067
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20)                    29   3.3  
SB_30227| Best HMM Match : Lactamase_B (HMM E-Value=1.1e-17)           28   4.4  
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score =  132 bits (318), Expect = 2e-31
 Identities = 57/75 (76%), Positives = 67/75 (89%)
 Frame = +1

Query: 322  KINKRVRDYQINLLNQPRPGKKLLVLDIDYTLFDHRSVAETGYELMRPFLHEFLTSAYVD 501
            KI++RV DY++N+LN P   KKLLVLDIDYTLFDHRSVAETG+ELMRP+LHEFLTSAY D
Sbjct: 831  KISRRVADYKVNILNDPEDNKKLLVLDIDYTLFDHRSVAETGFELMRPYLHEFLTSAYED 890

Query: 502  YDLVIWSATGMTWIE 546
            Y++VIWSAT M WI+
Sbjct: 891  YNIVIWSATSMKWID 905



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 36/55 (65%)
 Frame = +2

Query: 56  LKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLKIMMMGSLEEAI 220
           ++++  N+ G  P   K++++K+ GK  TD+  LS LNLK   KIMMMG+ EE +
Sbjct: 741 IRVSARNSMGYGPP-SKVVSVKYTGKTPTDDIKLSSLNLKQGAKIMMMGTREEKL 794


>SB_17036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +1

Query: 79  HGRSSRKTKAAQYKISGESGNRQLYIIRFESQAKFEDYDDGLSGRGNTRCSDK 237
           H  + RK +A QY++S  +G++QLY+ RF  Q +  D  +  S + +T   D+
Sbjct: 34  HMHTVRKHEAQQYRVSELNGSKQLYLRRFTPQEQNGDRSES-SNKSDTAFWDR 85


>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +1

Query: 358 LLNQPRPGKKLLVLDIDYTLFDHRSVAETGYELM---RPFLHEFLTSAYVDYDLVIWSAT 528
           LL   R GK + +++ +YT F  R++ E    ++   RP  H  L   YVD  L  W+ +
Sbjct: 343 LLFSSRCGKSVRLMNGNYTAFRPRALEEFNNAVVLTNRPIKHGELFEVYVDRQLDKWAGS 402


>SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 32  SPSDSVAMLKIAIENATGVRPERQKLLNIKFQG---KVATDNCTLSDLNLKPNL 184
           S   SV  L  A+E  TG+R +  +++  +FQG   KV   N +LS +    N+
Sbjct: 133 SQDGSVEQLMAAVERKTGIRVQNMRVVE-EFQGKFHKVFQRNSSLSSVTATDNI 185


>SB_30227| Best HMM Match : Lactamase_B (HMM E-Value=1.1e-17)
          Length = 313

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 136 HFPLKFYIEQLLSFWTNARGIFYSYFQHRYRIRGR 32
           H P + YIE+LL    +  GI + ++   ++IRGR
Sbjct: 277 HLPFRIYIEELLH---SLAGIIHYWYIRYWKIRGR 308


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 19  YSRIFALGFCSDVENSYRKCHGRSSRKTKAAQYKISGESGNRQLY 153
           Y R +   +    E SY++ + RS  ++    YK S E GN++ Y
Sbjct: 117 YKRGYERSYERSYERSYKRGYERSYERSYERGYKRSYERGNKRSY 161


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 38  SDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLKIMMM 199
           S S+ +L+ A++ +     +R+K   + FQ  V   +C++   NLK NLK M +
Sbjct: 850 SFSIHLLQFALKKSY----QRRKFGRVDFQFLVYCIHCSVHQKNLKWNLKCMQL 899


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,577
Number of Sequences: 59808
Number of extensions: 241530
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)