Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N20
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical p...    32   0.24 
Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical pr...    32   0.24 
U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine tr...    32   0.24 
AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z83236-11|CAB05785.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +2

Query: 8   KEYDIPEFSPSDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLK 187
           KE  + E   S    + K  +   T V PERQK++     G+   D+     + +K N+ 
Sbjct: 10  KEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVV---IMGRTLGDD-DWEGITIKENMT 65

Query: 188 IMMMGSLEE 214
           IMMMGS+ E
Sbjct: 66  IMMMGSVGE 74


>Z81468-3|CAB03876.1|  489|Caenorhabditis elegans Hypothetical
           protein C13B4.2 protein.
          Length = 489

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +2

Query: 8   KEYDIPEFSPSDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLK 187
           KE  + E   S    + K  +   T V PERQK++     G+   D+     + +K N+ 
Sbjct: 10  KEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVV---IMGRTLGDD-DWEGITIKENMT 65

Query: 188 IMMMGSLEE 214
           IMMMGS+ E
Sbjct: 66  IMMMGSVGE 74


>U32223-1|AAA74956.1|  489|Caenorhabditis elegans tRNA-guanine
           transglycosylase protein.
          Length = 489

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +2

Query: 8   KEYDIPEFSPSDSVAMLKIAIENATGVRPERQKLLNIKFQGKVATDNCTLSDLNLKPNLK 187
           KE  + E   S    + K  +   T V PERQK++     G+   D+     + +K N+ 
Sbjct: 10  KEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVV---IMGRTLGDD-DWEGITIKENMT 65

Query: 188 IMMMGSLEE 214
           IMMMGS+ E
Sbjct: 66  IMMMGSVGE 74


>AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical
           protein W08F4.3 protein.
          Length = 228

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 127 LKFYIEQLLSFWTNARGIFYSYFQHRYRIR 38
           ++FY++Q  ++W N     Y  FQH Y+ R
Sbjct: 195 IQFYMKQAYNYWNNLSHTLYRVFQH-YKAR 223


>Z50177-1|CAA90543.2|  607|Caenorhabditis elegans Hypothetical
           protein F46G10.2 protein.
          Length = 607

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 68  IENATGVRPERQKLLNIKFQGKVATD-NCTLSDLN-LKPNLKIMMMGSLEEAIQGAQTKP 241
           I NAT    ER +++ +K +GK A D  C   + N +    K  ++ SL +    A T P
Sbjct: 266 IANATFHGIERNQMVQVKVRGKNAIDGGCACVNCNCITDKTKFFVIPSLAKVTPPAPTSP 325


>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 82  GRSSR-KTKAAQYKISGESGNRQLYIIRFESQAKFED 189
           GRSSR KT  ++Y +  ESG+  L  +RF+ + KF D
Sbjct: 333 GRSSRTKTIRSKY-MCDESGDHLLVPLRFKHKGKFFD 368


>U41017-3|AAC48213.1|  548|Caenorhabditis elegans Hypothetical
           protein T26C11.4 protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 79  HGRSSRKTKAAQYKISGESGNRQLYIIRFESQAKFEDYDDGLSGRGNTRCSDK 237
           HG S+R +KA + + SG +  R +    +      + +DDG S R      D+
Sbjct: 297 HGHSNRDSKARRGQDSGFNHRRNVDSDGYNGGQNRDYFDDGFSNRTPNNYQDQ 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,563,102
Number of Sequences: 27780
Number of extensions: 181904
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)