Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N18
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   159   1e-40
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   159   1e-40
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    29   0.13 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   0.53 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   0.53 
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   2.8  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   2.8  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   2.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   4.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    24   4.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   6.5  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    24   6.5  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    23   8.6  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    23   8.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    23   8.6  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    23   8.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    23   8.6  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    23   8.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    23   8.6  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  159 bits (385), Expect = 1e-40
 Identities = 70/106 (66%), Positives = 90/106 (84%)
 Frame = +3

Query: 6   MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 185
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 186 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVPRPRVLRKLL 323
            R+RK   A+R GRH G+GKR+GTA ARMP   +W+ R RVLR+LL
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLL 106


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  159 bits (385), Expect = 1e-40
 Identities = 70/106 (66%), Positives = 90/106 (84%)
 Frame = +3

Query: 6   MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 185
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 186 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVPRPRVLRKLL 323
            R+RK   A+R GRH G+GKR+GTA ARMP   +W+ R RVLR+LL
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLL 106


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 208 SVFLRTRAREWTATGFLMTRPSLIILRMFC 119
           S F  T  REWT    L T    +++R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 248 PLTKATVTSFP-ARLCVFANTSAGMDSNWFLDDQTILDHLTD 126
           P   A + SF  +R CV  N    +  NW+   + I  HLTD
Sbjct: 121 PFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQRHLTD 162


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 128 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 33
           +VLS +     +D  +  PHL   +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 269 SSISCTSPLTKATVTSFPARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGIS 108
           S ISC SP+T  TV SF A L + +    G    W    + +L  L    S +S
Sbjct: 291 SIISCQSPITTLTV-SFDASLLI-SGDKDGNVLVWDSVSRQVLRRLVQYYSPVS 342


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +3

Query: 66  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 212
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 213 RRKGR 227
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 120 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 236
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 9   SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 134
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 108  TNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 206
            T S   ++ +IK+    +KP    ++++++KN+
Sbjct: 912  TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 18   KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 149
            +L +RLAA + RC  ++ W D          +   NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 216  CAPLCFCEHER 184
            C P+CFC +E+
Sbjct: 1236 CCPVCFCPYEK 1246


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 161 LDDQTILDHLTDVLSGISISD 99
           LDDQ  LD+  D++S IS+SD
Sbjct: 11  LDDQ--LDYQVDLVSEISVSD 29


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 170 NWFLDDQTILDHLTDVLSGISISDFIDL 87
           NW  ++   + +   VL GI   DFI L
Sbjct: 146 NWLFENTRTVSNHNSVLHGIKPIDFISL 173


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 112 LVLAISLISFGSSHTFF 62
           L+L++ LISFG   TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 112 LVLAISLISFGSSHTFF 62
           L+L++ LISFG   TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 22  YRRGLQPLLCDAVK 63
           Y+RG QPLL D V+
Sbjct: 194 YKRGFQPLLPDVVQ 207


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 112 LVLAISLISFGSSHTFF 62
           L+L++ LISFG   TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 118 LELVLAISLISFGSSHTFFLPHRITE 41
           + +V A  LI      TFFL H+I E
Sbjct: 308 MNIVAAALLIHCTEEQTFFLMHKICE 333


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 112 LVLAISLISFGSSHTFF 62
           L+L++ LISFG   TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,112
Number of Sequences: 5004
Number of extensions: 24283
Number of successful extensions: 90
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)