Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N18
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              175   5e-45
SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)               32   0.093
SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)                   31   0.16 
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.87 
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     29   1.1  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   2.6  
SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)                     27   3.5  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                27   4.6  
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          26   6.1  
SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          26   6.1  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_18345| Best HMM Match : PCI (HMM E-Value=3.5)                       26   8.1  
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    26   8.1  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  175 bits (427), Expect = 5e-45
 Identities = 79/106 (74%), Positives = 93/106 (87%)
 Frame = +3

Query: 6   MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 185
           + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  VHSR
Sbjct: 29  VGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSR 88

Query: 186 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVPRPRVLRKLL 323
           ARVRK  EAR KGRH G GKR+GTANARMPQK +W+ R RVLR+LL
Sbjct: 89  ARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLL 134


>SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)
          Length = 246

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 202 TQRRAGKDVTVALVRGEVQLMLECHKKNYGFQ 297
           +++R GKD+T+A ++G+++L+  C   N   Q
Sbjct: 23  SEKRYGKDITIAALKGKLELITGCSSANVDLQ 54


>SB_6531| Best HMM Match : EGF_2 (HMM E-Value=0.0016)
          Length = 407

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -2

Query: 215 ARLCVFANTSAGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIKPHLFFTASHNRGC 36
           A L + +N +   ++NW+   + +    TD++SG+ +     L+     +F+T S   GC
Sbjct: 261 ADLQLKSNATGSDNTNWYQKSRLLESPWTDLVSGLLVPTKFVLIGCCSRMFYTMSGEGGC 320


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 183 RARVRKNTEARRKGRHCGFGKRRGTANAR 269
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 212 RLCVFANTSAGMDSNWFLD----DQTILDHLTDVL 120
           ++CV A  SA  D+ W +     +QTI +HL DVL
Sbjct: 252 QMCVQAINSANSDARWLVQSLCCNQTIDEHLIDVL 286


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
 Frame = +3

Query: 48  MRCGKKKVWLDPNEINE--IANTNSRQ---NIRKM------IKDGLVIKKPVAVHSRARV 194
           +R G+K++ + P +  +  +   N+R+   N+RK+      ++  LV ++P+    R R 
Sbjct: 431 IRSGEKRIVIHPRKDKKRFLVRVNNRRKPFNLRKIPPNLSGLRRFLVRRRPIRRQRRRRR 490

Query: 195 RKNTEARRKGRHCGFGKRRGTANARMPQKELWVPRPRVLRK 317
           R+    RR+ R     +RR     R  ++     + R LR+
Sbjct: 491 RRRRRRRRQRRRRRRRRRRNRRKRRRRKRRTARRKRRELRR 531


>SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)
          Length = 640

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 140 QGWSGHQETSCCPFPRSCSQKHRGAQERT 226
           QG +G     C P PR C    RG Q  T
Sbjct: 173 QGGAGPYPGGCRPIPRGCRPIPRGVQAHT 201


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 39  ASVMRCGKKKVWLDP-NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEAR 215
           A+V   G ++   +P  EINE ANT +   I +   +G V+ +PV V     V+K   +R
Sbjct: 507 AAVDELGLEEALQEPVPEINETANTTNELTIVQNEMEGFVL-EPVEV-----VQKGKRSR 560

Query: 216 RK 221
           RK
Sbjct: 561 RK 562


>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 659

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 182 GMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIK 75
           G+D +   DD TI     D + G   SD +++VWIK
Sbjct: 308 GVDRDDNDDDDTIDCSDDDDIDGFDGSDDVEIVWIK 343


>SB_20908| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 576

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 182 GMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIK 75
           G+D +   DD TI     D + G   SD +++VWIK
Sbjct: 49  GVDRDDNDDDDTIDCSDDDDIDGFDGSDDVEIVWIK 84


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 143 LDHLTDVLSGISISDFIDLVWIKPHLFFT-ASHNRGC 36
           +D +  +LSGI  S   ++VW    +  T AS   GC
Sbjct: 424 IDEIVLILSGILASPDEEIVWFSAMMLHTLASQKSGC 460


>SB_18345| Best HMM Match : PCI (HMM E-Value=3.5)
          Length = 348

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
 Frame = +2

Query: 137 DQGWSG-----HQETSCCPFPRSCSQKHRGA 214
           D+G SG     H E  C P P+S ++  RG+
Sbjct: 256 DEGTSGKVPQEHDEDVCTPLPKSSAETQRGS 286


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 75  LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 191
           +D NEINE      R   RK   D L   KP++  +  R
Sbjct: 417 VDVNEINEAEKEIVRLVQRKAFADELAALKPISTEASTR 455


>SB_19819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 216 CAPLCFCEHERGNGQ 172
           C P+ +C H+RG G+
Sbjct: 299 CKPISYCSHQRGPGK 313


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 111 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARR 218
           +S  NIRK IKDG   K   P    S  +VRK +  RR
Sbjct: 95  SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRR 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,565,821
Number of Sequences: 59808
Number of extensions: 197945
Number of successful extensions: 601
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)