Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N18
(324 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 154 1e-38
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 154 1e-38
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 153 2e-38
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 1.2
At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2) ident... 28 1.6
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 2.2
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 2.2
At4g36980.1 68417.m05240 expressed protein 27 3.8
At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1 [Ra... 27 3.8
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 3.8
At5g66580.1 68418.m08393 expressed protein 26 6.7
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR... 26 6.7
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR... 26 6.7
At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containi... 26 6.7
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta... 26 6.7
At5g52065.1 68418.m06463 hypothetical protein 25 8.8
At3g20610.1 68416.m02608 non-race specific disease resistance pr... 25 8.8
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 154 bits (374), Expect = 1e-38
Identities = 69/106 (65%), Positives = 85/106 (80%)
Frame = +3
Query: 6 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 185
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 186 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVPRPRVLRKLL 323
+R R EA+RKGRH G+GKR+GT AR+P K LW+ R RVLR+ L
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFL 106
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 154 bits (374), Expect = 1e-38
Identities = 70/106 (66%), Positives = 86/106 (81%)
Frame = +3
Query: 6 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 185
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 186 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVPRPRVLRKLL 323
+R RK A+ KGRH G+GKR+GT AR+P K LW+ R RVLR+LL
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLL 106
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 153 bits (372), Expect = 2e-38
Identities = 68/106 (64%), Positives = 88/106 (83%)
Frame = +3
Query: 6 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 185
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 186 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWVPRPRVLRKLL 323
+R R+ A+RKGRH G+GKR+GT AR+P K LW+ R RVLR+LL
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLL 106
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 144 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 263
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At3g05630.1 68416.m00626 phospholipase D, putative (PLDP2)
identical to SP|Q9M9W8 Phospholipase D p2 (EC 3.1.4.4)
(AtPLDp2) (Phospholipase D2 PHOX and PX containing
domain) (Phospholipase D zeta 2) (PLDzeta2) {Arabidopsis
thaliana}; similar to phospholipase D GB:BAA24577 from
[Rattus norvegicus]; contains Pfam profile: PF00614
phospholipase D, PF00169 PH domain, PF00787 PX domain
Length = 1046
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 191 TSAGMDSNWFLDDQTILDHLTDVLSGISISDFIDLVWIKPHLF 63
TS G + WF+D T + + + + F+ W+ P L+
Sbjct: 359 TSDGSQAQWFVDGHTAFEAIAFAIQNATSEIFMTGWWLCPELY 401
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 180 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 287
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 144 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 257
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +3
Query: 3 RMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV-H 179
R+ + +L K++ KK + + ++A T+ R+ + + + P H
Sbjct: 439 RIMNKQLTKQIKKDSATETAKKREQERQRLEKLAETSRLSRNRQRSRSRSISRSPPPRRH 498
Query: 180 SRARVRKNTEARRKGRHCGFGKRRGTAN--ARMPQK 281
R+R R + +RR RH + R + +R P++
Sbjct: 499 RRSRSRSGSRSRRSRRHSSRSRSRSPSRSLSRSPKR 534
>At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1
[Rattus norvegicus] GI:3250916, ThiJ protein,
Escherichia coli, PIR:H64771; contains Pfam profile
PF01965 ThiJ/PfpI family
Length = 472
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 178 IPALVFAKTQRRAGKDVTVALVRGEVQL 261
I A+V RRAG DVTVA V ++++
Sbjct: 97 IEAVVLVDVLRRAGADVTVASVEQKLEV 124
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 3 RMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 149
+ S+ L++ AS+ K++ + N +EIA T+ Q+ K KDG
Sbjct: 248 KCSTPGLKRSWEASLSSLQSKRIRANNNNNSEIAKTDLAQSSAKQSKDG 296
>At5g66580.1 68418.m08393 expressed protein
Length = 156
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3
Query: 222 GRHCGFGKRRGTAN 263
GR CG GKRR TAN
Sbjct: 137 GRGCGKGKRRFTAN 150
>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1404
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 152 QTILDHLTDVLSGISISDFID 90
+T L HL + L G SI+ FID
Sbjct: 25 KTFLSHLIEALDGKSINTFID 45
>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1449
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 152 QTILDHLTDVLSGISISDFID 90
+T L HL + L G SI+ FID
Sbjct: 25 KTFLSHLIEALDGKSINTFID 45
>At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 862
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 57 GKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 236
GK + W D NE+ E +N NI ++I G +IK S ++ + + CG
Sbjct: 608 GKTERWDDVNELLEEMLSNRVSNIHQVI--GQMIKGDYDDDSNWQIVEYVLDKLNSEGCG 665
Query: 237 FGKR 248
G R
Sbjct: 666 LGIR 669
>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
putative contains similarity to 26S proteasome
regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
norvegicus]
Length = 1001
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 159 KKPVAVHS---RARVRKNTEARRKGRHCGFGKRRGTANARMPQKE 284
K P AV S +A+ + EA +K + G G ANA +KE
Sbjct: 837 KLPTAVLSTSAKAKAKAKKEAEQKAKAENSGNEAGKANAASDEKE 881
>At5g52065.1 68418.m06463 hypothetical protein
Length = 406
Score = 25.4 bits (53), Expect = 8.8
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = -3
Query: 271 IRALAVPLLLPKPQ*RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVLAISL 92
+R L +PL+ +L +RTR WT FL L ++R + +S+
Sbjct: 25 VRYLGLPLMTKAMSAHDYLPLVEKIRTRISSWTCR-FLSYAGRLQLIR------AVLMSI 77
Query: 91 ISFGSSHTFFLPHRITEAASLFCN 20
+F SS TF LP + C+
Sbjct: 78 TNFWSS-TFSLPDACIKEIQQLCS 100
>At3g20610.1 68416.m02608 non-race specific disease resistance
protein, putative similar to non-race specific disease
resistance protein NDR1 [Arabidopsis thaliana]
gi|2754816|gb|AAB95208
Length = 222
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 196 RTRAREW--TATGFLMTRPSLIILRMFCLELVLAISLISFGSSHTFFLP 56
R A EW T G LMT + L CL L + I S H F++P
Sbjct: 3 RDDAWEWFVTIVGSLMTLLYVSFLLALCLWLSTLVHHIPRCSIHYFYIP 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,412,284
Number of Sequences: 28952
Number of extensions: 137650
Number of successful extensions: 470
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -