Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N17
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   0.48 
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   0.63 
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   1.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   1.5  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   1.5  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   1.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   2.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   4.4  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    24   5.9  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      24   7.8  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   7.8  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    24   7.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    24   7.8  

>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGHTSSWGVAFPSILTK 304
           Y K + +I++++  +RG  VLP+   P      G  F   ++K
Sbjct: 209 YNKSEAQIMIRYCLQRGFIVLPKSSTPRRIKENGDVFDFEISK 251


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 42  KNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLG 155
           K +D +   +  VL WH + +Q +  + +   ELS LG
Sbjct: 111 KLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELSFLG 148


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 269 SWGVAFPSILTKCYNGEEYVGLG 337
           SW +A P+ L  C N  +YV  G
Sbjct: 95  SWKLAIPAFLYTCQNNLQYVAAG 117


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 189 SRLVYTNVDDKLRVDLVRETFHCDKENSDHRRYANGVRSFYSR 61
           SR VY  + D   ++  RET  C KENS    Y + V+SF  R
Sbjct: 727 SRKVYHRLYDNTVIE--RETIICQKENS---FYIDTVKSFRDR 764


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 195 SISRLVYTNVDDKLRVDLVRETFHCDKENSD 103
           S+++  +  +DD+ R D V ETFH D+E  D
Sbjct: 350 SLNQQRWLKIDDEQR-DYVMETFHEDEELED 379


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 137 GKLFTVIRKTLIIDDMPMEYVHFIR 63
           G ++  ++KT+IIDD  ++Y+  ++
Sbjct: 164 GTMYAFLKKTVIIDDSYLQYLSTVK 188


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 302 LLGCWGKLLPMNSCD 258
           L GCWGK+  MN  D
Sbjct: 11  LKGCWGKIANMNHLD 25


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 54  HRYSLVSSITINS 16
           HRYSLV S+T++S
Sbjct: 332 HRYSLVESVTLSS 344


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 207 FTTISISRLVYTNVDDKLRVDL 142
           +TT  +S L   N  ++LR+DL
Sbjct: 708 YTTFELSNLYLKNCGERLRIDL 729


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 272 MNSCDLVHQTLVRLEPLSQRRVSLQSLYRVWCTLMWM 162
           + SC L+  TL  L P+        S   VW   +W+
Sbjct: 144 VKSCILIVLTLAGLSPILMSLTKSTSPDSVWAIAVWL 180


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 122 VIRKTLIIDDMPMEYVHFIRGHGID 48
           V  +TL  +D+  EY+ F RGH  D
Sbjct: 807 VASETLNFNDLKGEYLVFRRGHAPD 831


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 36  ILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSR 149
           I + I+  A  +   L      +   PY+S KFP ++R
Sbjct: 377 IRRTIEQNATERSEDLLLKFCKETIVPYYSSKFPRITR 414


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 84  HWHIVDDQSFPYHSEKFPELSR 149
           H H +DD  FPY   +  E SR
Sbjct: 407 HRHDIDDADFPYKHLRKGEYSR 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,585
Number of Sequences: 5004
Number of extensions: 29458
Number of successful extensions: 80
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)