Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N17
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1000 - 23220878-23221821,23222164-23223001 68 2e-12
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 66 9e-12
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 64 2e-11
03_02_0187 - 6248226-6249226,6249296-6250148 59 8e-10
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 37 0.005
07_03_1243 + 25134422-25135201 28 1.8
01_06_1417 - 37189068-37190321 27 3.1
03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570 26 7.1
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAY 161
DT R Y ++ IL+ IDAMAANKMNV HWHI D QSFP P L+ G+Y
Sbjct: 195 DTGRTYFPVADILRTIDAMAANKMNVFHWHITDSQSFPLELPSEPALAEKGSY 247
Score = 55.6 bits (128), Expect = 1e-08
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGHTSSWGVAFPSILT 301
YT D++++V A RGVRV+PE D PGHT+SW A+P +++
Sbjct: 253 YTVDDVKLIVDFAMNRGVRVVPEIDTPGHTASWAGAYPELVS 294
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 65.7 bits (153), Expect = 9e-12
Identities = 29/47 (61%), Positives = 35/47 (74%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPEL 143
DTSRHYL ++ I K ID MA +K+NVLHWHIVD QSFP +P+L
Sbjct: 173 DTSRHYLPVTVIKKVIDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKL 219
Score = 52.0 bits (119), Expect = 1e-07
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGHTSSWGVAFPSI 295
YT D +V++A RGV V+ E DVPGH SWGV +PS+
Sbjct: 230 YTTSDAVDIVRYAENRGVNVMAEIDVPGHALSWGVGYPSL 269
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 64.5 bits (150), Expect = 2e-11
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAY 161
DTSRHYL + I ID+M +K+NVLHWHIVD+QSFP +P+L GAY
Sbjct: 180 DTSRHYLPVPVIKSVIDSMTYSKLNVLHWHIVDEQSFPIEIPSYPKLWN-GAY 231
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGHTSSWGVAFPSI 295
YT D +V++A RGV VL E DVPGH SWGV +PS+
Sbjct: 237 YTMDDAIDIVQYAERRGVNVLAEIDVPGHALSWGVGYPSL 276
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 59.3 bits (137), Expect = 8e-10
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHP 167
DT+R++ + IL + AMA NK+NV HWHI D QSFP P L+ G+Y P
Sbjct: 200 DTARNFYPVRDILHTLRAMAFNKLNVFHWHITDAQSFPIVLPTVPNLANSGSYSP 254
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 12/58 (20%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVP------------GHTSSWGVAFPSILTKCYN 313
YT+ D+ +V AA G+RV+PE D+P GHT SW A+P I+T C N
Sbjct: 258 YTENDVRHIVSFAASFGIRVIPEIDMPVYSRLSVARFGSGHTGSWAGAYPEIVT-CAN 314
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 36.7 bits (81), Expect = 0.005
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 224 GVRVLPEFDVPGHTSSWGVAFPSI 295
G+ V+ E DVPGH SWG +P +
Sbjct: 261 GIHVMAEIDVPGHAESWGKGYPKL 284
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKM 74
DTSRH+L + I + ID+M+ +K+
Sbjct: 193 DTSRHFLPVDVIKQVIDSMSFSKL 216
>07_03_1243 + 25134422-25135201
Length = 259
Score = 28.3 bits (60), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 75 SFYSRPWHRYSLVSSITINSAWMC 4
SF++ PWH +L N W+C
Sbjct: 65 SFFAHPWHTLTLCRMPPENKGWVC 88
>01_06_1417 - 37189068-37190321
Length = 417
Score = 27.5 bits (58), Expect = 3.1
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -2
Query: 332 NRRTLHRCNILLGCWGKLLPMNSCDLVHQTLVRLEPLSQRRVSLQSL 192
N RT NIL C + L + DL H T+ +EP QR L+SL
Sbjct: 108 NVRTNPNVNILEKCGRQKLEV--LDLDHNTITGVEPSYQRFTCLKSL 152
>03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570
Length = 179
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 266 SSWGVAFPSILTKCYNG 316
S WG+A P ILT YNG
Sbjct: 128 SCWGLAPPLILTVTYNG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,385,477
Number of Sequences: 37544
Number of extensions: 178533
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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