Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N17
(348 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 1e-15
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 49 9e-07
SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 47 4e-06
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 44 3e-05
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07) 42 1e-04
SB_58967| Best HMM Match : Sec23_BS (HMM E-Value=5.9) 30 0.45
SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 1.8
SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1) 28 2.4
SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4) 27 5.5
SB_28172| Best HMM Match : Ank (HMM E-Value=1.7e-37) 27 5.5
SB_9235| Best HMM Match : TolA (HMM E-Value=0.33) 26 9.7
>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 78.6 bits (185), Expect = 1e-15
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYH 164
DTSRHYL LS I K +DAM+ K NVLHWH+VDDQSFP+ S+ FP LS G+++
Sbjct: 280 DTSRHYLKLSIIKKFLDAMSYAKFNVLHWHVVDDQSFPFQSQTFPSLSDQGSFN 333
Score = 58.8 bits (136), Expect = 1e-09
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGHTSSWGVAFPSILTKCYN--GEEYVGLGPI 343
Y+ D+ ++ +A RG+RV+PEFD PGHT SW + P++LTKC + G+ LGPI
Sbjct: 339 YSPADVADIIDYARMRGIRVIPEFDTPGHTYSWR-SIPNLLTKCCDAKGKPTGSLGPI 395
>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 296
Score = 49.2 bits (112), Expect = 9e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGHTSSWGVAFPSILTK 304
YT+ I+ VVK+AA G+RV+PE DVPGH ++ A+P + +K
Sbjct: 34 YTQHQIKDVVKYAARLGIRVIPEIDVPGHATAILTAYPELGSK 76
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 72 MNVLHWHIVDDQSFPYHSEKFPELSRLGA 158
MNV HWH+ DDQ F S+ +P+L L +
Sbjct: 1 MNVFHWHLTDDQGFRIESKVYPKLHELAS 29
>SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 804
Score = 47.2 bits (107), Expect = 4e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHPH 170
D R+++ S+ILK IDA + K+N LH H+ DD+ + PEL+ LG+ H
Sbjct: 342 DLGRNFMPKSEILKLIDATSMYKLNKLHLHLTDDEGWRLEIPGLPELTTLGSKRCH 397
Score = 35.9 bits (79), Expect = 0.009
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGH 262
YT + ++++A +R V V+PEFD+PGH
Sbjct: 423 YTVSEYRDILRYARDRHVEVIPEFDMPGH 451
>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 1788
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA 158
D R+++ + +LK +DAMA KMN H+H+ DD+ + EL+ +G+
Sbjct: 1122 DVGRNFMEKAAVLKLLDAMATYKMNKFHFHLTDDEGWRLEIPGLEELTTVGS 1173
Score = 33.5 bits (73), Expect = 0.048
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGH 262
Y+ D + ++K A + ++V+PEFD+PGH
Sbjct: 1202 YSVSDYKEILKRANDLHIQVIPEFDMPGH 1230
>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
Length = 228
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 3 DTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPEL 143
DT R + + + +DAM+ K+NVLH+H+ D F S+ FP+L
Sbjct: 61 DTGRRFFPMDLLYNTLDAMSYVKLNVLHFHLSDLCRFSVESKLFPDL 107
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 176 YTKRDIEIVVKHAAERGVRVLPEFDVPGHTSSWGVAFP 289
YT+ D+ +V +A +RG+RV+PE + S++ + P
Sbjct: 115 YTQDDVRNLVAYARDRGIRVMPEVEGAAKPSAYWMYDP 152
>SB_58967| Best HMM Match : Sec23_BS (HMM E-Value=5.9)
Length = 123
Score = 30.3 bits (65), Expect = 0.45
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = -1
Query: 258 PGTSNSGKTRTPLSA--ACFTTISISRLVYTNVDD-KLRVDL 142
PG S S + +T SA AC T+ + RL +T VDD +LR L
Sbjct: 57 PGFSQSRRCKTTASAKLACLQTMFVYRLRFTIVDDLRLRFSL 98
>SB_6208| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 559
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = -1
Query: 240 GKTRTPLSA-ACFTTISISRLVYTNVDDKLRVDLVRETFH----CDKENSDHRRYANGVR 76
G RTP T S S L +T +DKL V F C KE+++HR + +GV
Sbjct: 48 GSHRTPFFVNKALVTSSRSALHFTT-NDKLFVHFAIWMFFYRFVCGKESTEHREFTSGVS 106
Query: 75 SFYSR 61
+S+
Sbjct: 107 LPFSK 111
>SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1)
Length = 255
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 165 DDKLRVDLVRETFHCDKENSDHRRYANGVRSFYSRPWHRYSLVSSI 28
D +L LV H + DHR YA+ V +F P H + L +S+
Sbjct: 199 DHRLYASLVEAFNHSSLQ--DHRLYASLVEAFNHSPLHDHRLYASL 242
>SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 239 PEFDVPGHTSSWGVAFPSILT-KCYNGEEYVGL 334
P VP H +WG+ + +T CY+G +VG+
Sbjct: 357 PRIAVPYH-DAWGLGLITTVTLPCYHGNTFVGV 388
>SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)
Length = 1209
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 221 RGVRVLPEFDVPGHT---SSWGVAFPSILTKCYN 313
R V+ +F PG + ++ G AFP+I+TK YN
Sbjct: 357 RVTEVVNKFFYPGESPTQATKGYAFPTIVTKLYN 390
>SB_28172| Best HMM Match : Ank (HMM E-Value=1.7e-37)
Length = 291
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 188 DIEIVVKHAAERGVRVLPEFDVPGHT 265
DI++ A+ GV++L E D GHT
Sbjct: 28 DIKVCRDLVAQNGVKILSEHDEKGHT 53
>SB_9235| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 579
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 6 TSRHYLSLSKILKNIDAMAANKMNVLH--WHIVDDQSFPYHS 125
+S+ +LSL + + A N + L+ WH+ DD HS
Sbjct: 97 SSKEFLSLQQSILADTKEAVNLLKELYTPWHLTDDDGVQAHS 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,088,638
Number of Sequences: 59808
Number of extensions: 217298
Number of successful extensions: 525
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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