Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N16
(604 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 299 3e-80
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 279 4e-74
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 247 1e-64
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 212 6e-54
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 182 4e-45
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 181 1e-44
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 170 2e-41
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 170 2e-41
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 166 3e-40
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 163 3e-39
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 152 5e-36
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 146 4e-34
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 146 5e-34
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 141 1e-32
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 136 3e-31
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 135 7e-31
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 122 7e-27
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 114 1e-24
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 108 9e-23
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 107 2e-22
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 102 6e-21
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 101 2e-20
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 101 2e-20
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 98 2e-19
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 94 2e-18
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 93 3e-18
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 88 1e-16
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 87 2e-16
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 87 2e-16
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 70 4e-11
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 69 6e-11
UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2; Thermoprotei... 65 1e-09
UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarc... 61 2e-08
UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole gen... 48 1e-04
UniRef50_Q8N2J0 Cluster: CDNA FLJ90562 fis, clone OVARC1001163; ... 36 0.74
UniRef50_UPI000049A0BB Cluster: hypothetical protein 6.t00033; n... 36 0.97
UniRef50_Q8X0L3 Cluster: Putative uncharacterized protein B11B23... 36 0.97
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 35 1.7
UniRef50_Q4WN15 Cluster: Putative uncharacterized protein; n=2; ... 34 2.3
UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiell... 34 3.0
UniRef50_Q5KM20 Cluster: Pre-mRNA-splicing factor CWC26; n=1; Fi... 34 3.0
UniRef50_UPI00005E1AE6 Cluster: putative non-structural protein ... 33 3.9
UniRef50_Q3U4V6 Cluster: 2 days neonate thymus thymic cells cDNA... 33 3.9
UniRef50_A1WV40 Cluster: Putative uncharacterized protein; n=1; ... 33 5.2
UniRef50_Q7QSZ2 Cluster: GLP_384_18902_20299; n=1; Giardia lambl... 33 6.9
UniRef50_Q4QFI9 Cluster: Putative uncharacterized protein; n=3; ... 33 6.9
UniRef50_UPI0000F2E94D Cluster: PREDICTED: hypothetical protein;... 32 9.1
UniRef50_Q3WEH4 Cluster: Putative uncharacterized protein; n=1; ... 32 9.1
UniRef50_A1B7L8 Cluster: Putative uncharacterized protein precur... 32 9.1
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 299 bits (734), Expect = 3e-80
Identities = 139/174 (79%), Positives = 156/174 (89%)
Frame = +3
Query: 81 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 260
RG++V+ + E+PLVVSDK+QEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR
Sbjct: 5 RGYVVDNVSEIPLVVSDKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 64
Query: 261 RRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDR 440
RR+ RKGPLIIYNKD+GLTR+FRNIPG++M APGGH+GRF+IWT+SAF+R
Sbjct: 65 RRLHRKGPLIIYNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFER 124
Query: 441 LDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRAT 602
LD +FGSWKTPS EKK FNLPQPKMANTDLSRLLKSEEIR+VLRAP KRVVRAT
Sbjct: 125 LDAIFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRRVLRAPIKRVVRAT 178
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 279 bits (684), Expect = 4e-74
Identities = 128/199 (64%), Positives = 158/199 (79%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
+VN+ QRR SGVPALVQ++GH+++ + E PLVVSD+VQ++ KTKQAVIFLRR
Sbjct: 117 KVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRR 176
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+K W+D+ KVYKSQR RAG+G MR+RRR+ R+GPL++Y+KD+GL +AFRNIPGIE
Sbjct: 177 LKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVD 236
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLL 542
APGGH+GRF+IWT+SAF RL+ LFG+WK PS KK +NLPQPKMANTDLSRLL
Sbjct: 237 KLNLLKLAPGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLL 296
Query: 543 KSEEIRKVLRAPNKRVVRA 599
KSEEIRKVLR P KRV R+
Sbjct: 297 KSEEIRKVLRDPRKRVFRS 315
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 247 bits (605), Expect = 1e-64
Identities = 111/198 (56%), Positives = 147/198 (74%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
RVN Q+R S +PALV ++GH +E++PELPLVV DKV+ KTK+AV+ L++
Sbjct: 114 RVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKK 173
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+KAW+D+ KVY SQR+RAGKGKMRNRRR+QR+GP IIYN+D G+ +AFRNIPGI +
Sbjct: 174 LKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVS 233
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLL 542
APGGH+GRF IWT+SAF +LD L+G+W+ ++ K +NLP KM NTDLSR+L
Sbjct: 234 KLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRIL 293
Query: 543 KSEEIRKVLRAPNKRVVR 596
KS EI++ LRAP K++ R
Sbjct: 294 KSPEIQRALRAPRKKIHR 311
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 212 bits (517), Expect = 6e-54
Identities = 100/199 (50%), Positives = 138/199 (69%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
RVN++++R S VP+L+ ARGH VE +PE+PLVV D I KT +AV L++
Sbjct: 117 RVNIKEKRYAVCSAIAASAVPSLLLARGHRVEGVPEVPLVVDDSASSIKKTAKAVELLKQ 176
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ A++D+ KV S+ +R+GKGKMRNRR VQR+GPL++Y++D G+TRAFRNIPG+E+
Sbjct: 177 LGAYADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDNGVTRAFRNIPGVELCSVD 236
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLL 542
APGGH+GRFIIWTKSAF++LD +FG+ + S KK + P MA TDL+RL+
Sbjct: 237 RLGLLTLAPGGHVGRFIIWTKSAFEKLDSIFGTSTSKSASKKGWKPPTNIMAQTDLTRLI 296
Query: 543 KSEEIRKVLRAPNKRVVRA 599
S+EI+ L AP +RA
Sbjct: 297 NSDEIQSALNAPKLGAIRA 315
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 182 bits (444), Expect = 4e-45
Identities = 95/196 (48%), Positives = 120/196 (61%), Gaps = 6/196 (3%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKV---QEINKTKQAVIF 173
++NL Q+R SG PAL+ ARGH V +PE+PLV+S I KT AV
Sbjct: 90 KINLNQKRFATASALAASGSPALLMARGHNVSTVPEVPLVISSTAFADAAIRKTSAAVAL 149
Query: 174 LRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD---KGLTRAFRNIPGI 344
L+ + A +D K S++LRAGKGK+R RR QR+GPL+IYN D K L +AFRNIPG+
Sbjct: 150 LKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVKAFRNIPGV 209
Query: 345 EMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANT 524
E APGGHLGRFI+WT SAF LD ++GS PS KK F LP M
Sbjct: 210 ETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALDTIYGSTTEPSALKKDFLLPSTMMKQP 269
Query: 525 DLSRLLKSEEIRKVLR 572
DLS+++ S +I+KVLR
Sbjct: 270 DLSKIINSSDIQKVLR 285
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 181 bits (440), Expect = 1e-44
Identities = 90/194 (46%), Positives = 126/194 (64%)
Frame = +3
Query: 6 VNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRI 185
VN+ QRR S P+LV ARGH ++ +PELPLVVSD V++I KTK+AV L +
Sbjct: 115 VNVTQRRFAMCSAIAASSNPSLVLARGHKIDNVPELPLVVSDDVEQIKKTKEAVKVLAAL 174
Query: 186 KAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXX 365
KA DV +S+R+R G GK RNRR QR+G LI++++++GL AFRNI G+++
Sbjct: 175 KASDDVKHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQNEGLANAFRNISGVDISNVXR 234
Query: 366 XXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLLK 545
APGGHLGRFIIWT+ A+ +LD L+G+ + K + P P + NTDLSR++
Sbjct: 235 LNIRDLAPGGHLGRFIIWTEGAYKKLDKLYGTRFRTALLKNEYKHPTPSVTNTDLSRIIH 294
Query: 546 SEEIRKVLRAPNKR 587
S ++ VL+A K+
Sbjct: 295 SPTVQSVLKARGKQ 308
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 170 bits (414), Expect = 2e-41
Identities = 89/197 (45%), Positives = 123/197 (62%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQE---INKTKQAVIF 173
++NL Q+R SGVPAL+ ARGH + ++ E+PLV++ +V E I +T A
Sbjct: 113 KINLGQKRFATVSALAASGVPALLFARGHQISEVAEVPLVINSEVFEGAKIARTAAAAGL 172
Query: 174 LRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYN---KDKGLTRAFRNIPGI 344
L+ + A DV KV S++LRAGKGK+R RR QR+GPL++Y+ K L RAFRN+PG+
Sbjct: 173 LKTVGALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGPLVVYDGATDGKELVRAFRNLPGV 232
Query: 345 EMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANT 524
E APGGHLGRFIIW+ SAF LD ++G+ PS KK F LP ++
Sbjct: 233 ETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKALDNIYGTTTAPSALKKDFLLPSNVVSQA 292
Query: 525 DLSRLLKSEEIRKVLRA 575
D+ RL+ S E++ V+RA
Sbjct: 293 DIGRLINSSELQSVIRA 309
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 170 bits (413), Expect = 2e-41
Identities = 87/189 (46%), Positives = 121/189 (64%), Gaps = 2/189 (1%)
Frame = +3
Query: 15 RQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDK-VQEINKTKQAVIFLRRIKA 191
+ RR S VPALV ARGH + +P++PLVV+ K + I KTKQAV L++I A
Sbjct: 118 QMRRFAVASCIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINA 177
Query: 192 WSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIY-NKDKGLTRAFRNIPGIEMXXXXXX 368
+SDVLKV S+ +RAG+GKMR R+ +RKGPL++Y N D +AFRNIPG++
Sbjct: 178 YSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENL 237
Query: 369 XXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLLKS 548
APG H+GRFIIWT+SAF +L+ +FG+ K + K F + +MA D+ R++ +
Sbjct: 238 SVLNLAPGCHIGRFIIWTESAFKKLNTIFGTQKKMAQGKSGFRIAHAQMAVPDMKRVVVA 297
Query: 549 EEIRKVLRA 575
E K+LRA
Sbjct: 298 AEKAKLLRA 306
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 166 bits (404), Expect = 3e-40
Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 2/199 (1%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
RVN++Q+R +G+ LV ARGH + ++P++PLVV DK++ KT A+ FL+R
Sbjct: 115 RVNIKQKRHAAATAVAATGIVPLVLARGHRISQVPQIPLVVEDKIESYEKTTDALNFLKR 174
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIY-NKDKGLTRAFRNIPGIEMXXX 359
A+ DV KV ++ +RAG K R ++ RKGPL++Y N++ L +AFRN+PG+E+
Sbjct: 175 FGAFEDVQKVVSTKVVRAGISKQRGKKYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNV 234
Query: 360 XXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRL 539
APGG LGRF+IWT+SAF LD LFG+++ S K + L +P + N DL+R+
Sbjct: 235 TRLNLLQLAPGGQLGRFVIWTQSAFAHLDKLFGTYRYASVLKDGYQLLRPLLTNPDLARI 294
Query: 540 LKSEEIR-KVLRAPNKRVV 593
+ S +++ KV A +V+
Sbjct: 295 INSNQVQEKVQPAKTTKVL 313
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 163 bits (396), Expect = 3e-39
Identities = 79/192 (41%), Positives = 116/192 (60%), Gaps = 2/192 (1%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++N ++R +G P+LV ARGH + +PELPLV+S+++Q INKT AV F +
Sbjct: 115 KINTTEKRHAVAAAIAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAVEFFKN 174
Query: 183 I-KAWSDVLK-VYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXX 356
K + +K + S +R GKGKMRNRRRV GPL++Y +D G+ +A RNI G++
Sbjct: 175 FGKGLEEEMKRIESSIAIRCGKGKMRNRRRVCAVGPLVVYAEDNGIVKAMRNIKGVDTCS 234
Query: 357 XXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSR 536
APGG GR I+TK A RL ++GS+ S+ K + LP+P M N D++R
Sbjct: 235 VERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIYGSYTHGSSSKVGYTLPRPAMTNADITR 294
Query: 537 LLKSEEIRKVLR 572
++ S E++ VLR
Sbjct: 295 IINSTEVQSVLR 306
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 152 bits (369), Expect = 5e-36
Identities = 72/189 (38%), Positives = 115/189 (60%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++NL+++R SG+ +LV ARGH + + E+PLV S+ ++ + KTK A+ FL
Sbjct: 114 KINLKEKRYAVCSSIAASGITSLVLARGHRISNLKEVPLVASNDIESMQKTKDALKFLIS 173
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ +V ++ KS +LRA GKMRNR+ GPLIIY+ D G+ +AFRNIPG+++
Sbjct: 174 LGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGPLIIYSXDSGIKKAFRNIPGVDLCNVT 233
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLL 542
APGG +GR IW++ AF +LD ++G KK + LP+P + N D+ R++
Sbjct: 234 KLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYGKTFQKYVTKKNYILPKPIVNNADIYRII 293
Query: 543 KSEEIRKVL 569
S++++ L
Sbjct: 294 NSDQVQASL 302
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 146 bits (354), Expect = 4e-34
Identities = 76/193 (39%), Positives = 111/193 (57%)
Frame = +3
Query: 15 RQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAW 194
RQR+ + V LVQARGH++ ++ E+P+VV D VQEI +T+ AV L+++ +
Sbjct: 115 RQRKFAIASAIAATAVVPLVQARGHVLGEVKEVPIVVVDAVQEIKRTRDAVELLKKVGVY 174
Query: 195 SDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXX 374
DV +V R+ KGK R +KGPL+IYN+DKG+ +AFRNIPG+E
Sbjct: 175 GDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISVKALAL 234
Query: 375 XXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLLKSEE 554
AP +GR +WT+SAF LD ++ S KK F+LP+ M N D+ ++ S+
Sbjct: 235 AKLAPAAQVGRLTVWTESAFKALDGIYES-------KKRFSLPRSIMTNADIEAVITSDA 287
Query: 555 IRKVLRAPNKRVV 593
++ VL K VV
Sbjct: 288 VQSVLN-EKKEVV 299
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 146 bits (353), Expect = 5e-34
Identities = 74/187 (39%), Positives = 110/187 (58%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
+VNL QRR S ALV+ARGH + +P +PLVV + KTK A+ ++
Sbjct: 104 KVNLNQRRYAVASALAASANAALVEARGHRIADVPSIPLVVD--TDNVTKTKDALAIIKA 161
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ DV + S+ +RAG+GKMRNRR + RKGPL+IYN + + R FRN+PG+++
Sbjct: 162 VGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTE-DVARGFRNLPGVDLCHVS 220
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLL 542
APG H GR I+WTKSAF LD ++ + K+ + LP+ + TD+ R+L
Sbjct: 221 SIRLLELAPGSHPGRLILWTKSAFASLDDVYAA-------KQNYTLPRSCITQTDIERIL 273
Query: 543 KSEEIRK 563
+S+ ++K
Sbjct: 274 QSDAVQK 280
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 141 bits (341), Expect = 1e-32
Identities = 63/131 (48%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Frame = +3
Query: 78 ARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRN 257
ARGH +E +PELPLV+ D + + KT A+ L++ A+ D K S + GKGKMRN
Sbjct: 2 ARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRN 61
Query: 258 RRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAF 434
RR + RKGPLI+Y + L +AFRNIPG+E+ APGGHLGRF+IWTKS+F
Sbjct: 62 RRYISRKGPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSF 121
Query: 435 DRLDPLFGSWK 467
++LD ++ S++
Sbjct: 122 EKLDSIYRSFE 132
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 136 bits (330), Expect = 3e-31
Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Frame = +3
Query: 123 VSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIY-N 299
V DK++ KTK A+ FL+R A+ DV KV ++ +RAG K R ++ RKGPL++Y N
Sbjct: 1 VEDKIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFN 60
Query: 300 KDKGLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSN 479
++ L +AFRN+PG+E+ APGG LGRF+IWT+SAF LD LFG+++ S
Sbjct: 61 ENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKLFGTYRYSSI 120
Query: 480 EKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVV 593
K + L +P + N DL+R++ S ++++ ++A + V
Sbjct: 121 LKDGYQLLRPLLTNPDLARIINSNQVQEKVQAAKQTTV 158
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 135 bits (327), Expect = 7e-31
Identities = 69/175 (39%), Positives = 101/175 (57%)
Frame = +3
Query: 54 SGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLR 233
S +LV+ARGH + + LP++VSD + + KTK AV LR + ++ +V KS+ +R
Sbjct: 128 SAQASLVEARGHRISDVKMLPIIVSDDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVR 187
Query: 234 AGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFI 413
GKGKMRNRR QRKG LI++ + + FRNI G++ APGG GR I
Sbjct: 188 CGKGKMRNRRYTQRKGILIVHGESSEML-GFRNIRGVDQMSIDSLDLLELAPGGVAGRLI 246
Query: 414 IWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAP 578
IWT+SAF++LD +FG + + F LP + + DL L S+ ++ +L P
Sbjct: 247 IWTESAFEKLDKIFGGVEREAELTPGFKLPNRIVTHDDLEELFYSDAVQAILDEP 301
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 122 bits (294), Expect = 7e-27
Identities = 60/131 (45%), Positives = 84/131 (64%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++NL Q+R S VP+LV +RGH + +PE+PLVV D +Q KTK+A+ FL+
Sbjct: 113 KINLHQKRFAVVSALAASSVPSLVMSRGHQIGNVPEVPLVVEDSIQGYEKTKEAMAFLKA 172
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
I A DV +V S+ +RAG+GKMRNRR V R+GP+++ +KG TRAFRNI G+++
Sbjct: 173 IAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNKG-TRAFRNIFGLDLANVS 231
Query: 363 XXXXXXXAPGG 395
APGG
Sbjct: 232 ALTLLHLAPGG 242
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 114 bits (275), Expect = 1e-24
Identities = 52/152 (34%), Positives = 87/152 (57%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
RVN ++RR + P V+ RGH+++ +P LP+VV D+++ +NK ++ F +
Sbjct: 108 RVNRKERRAALRSALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKS 167
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ W+DV + ++R+RAGKGK R RR V+ K LI+ ++D+G+ RN PG+++
Sbjct: 168 VGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKLGARNHPGVDVVEAM 227
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFG 458
APG H GR ++T A + L+ G
Sbjct: 228 HLGVEHLAPGAHPGRLTVFTPGALEVLEERLG 259
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 108 bits (260), Expect = 9e-23
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 2/202 (0%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
+VNL+++R + V +V +RGH +E + E+P+VV D +++INKTK AV L
Sbjct: 113 KVNLKEKRQALASALAATAVVPVVMSRGHRIEALREVPMVVDDAIEQINKTKDAVKLLET 172
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD--KGLTRAFRNIPGIEMXX 356
I +++ ++ K G+ R+ R+ + GPLII +G RAFRNIPG+E+
Sbjct: 173 IGLGAELKRIDKV------TGRARDGRKKRPVGPLIILRATAVEG-KRAFRNIPGVEVAC 225
Query: 357 XXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSR 536
AP G LGR +W+KSAF+ LD +P + N DLS
Sbjct: 226 VERLNLLKLAPAGALGRLCVWSKSAFEALDDYIKM------------MPTKLLKNADLSA 273
Query: 537 LLKSEEIRKVLRAPNKRVVRAT 602
L++S ++ LRAP + +AT
Sbjct: 274 LIESTPVQAALRAPREGTPKAT 295
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 107 bits (258), Expect = 2e-22
Identities = 66/155 (42%), Positives = 88/155 (56%)
Frame = +3
Query: 132 KVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG 311
KV+ KTK+ V+ L+++KAW+D+ KVY SQR+RAGKGKMRNRR +QR+G IIYN+D G
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNG 157
Query: 312 LTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKT 491
+ +A +E G W K+A S K+
Sbjct: 158 IIKASET--SLESLYLIAFCKLDDLYG-------TWPKAA---------SLKS------N 193
Query: 492 FNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVR 596
+NLP KM NTDLSR+LK I++ LRAP KR+ R
Sbjct: 194 YNLPMHKMLNTDLSRILKRPGIQRALRAPRKRIHR 228
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 102 bits (245), Expect = 6e-21
Identities = 51/147 (34%), Positives = 82/147 (55%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++N ++ R + LV+ R H+ E ELP VVS++++ + +TK R
Sbjct: 103 KINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNELESVKRTKDVAEVFRA 160
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
I ++DV + + +R RAG+GKMR RR V++K L++ KD G+ +A +N+PG++
Sbjct: 161 IGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVK 220
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRL 443
APG H GR +WTKSA + L
Sbjct: 221 DLNVELLAPGCHPGRLTVWTKSAVEYL 247
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 101 bits (241), Expect = 2e-20
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Frame = +3
Query: 6 VNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRI 185
+N ++++ + + V ARGH+VEK+P LP+VV ++IN+ K+A +
Sbjct: 132 INKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEAL 191
Query: 186 KAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNK-DKGLTRAFRNIPGIEMXXXX 362
W DV + + ++RAGKGKMR RR + K L++ + + L A RN PG+++
Sbjct: 192 GLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVDVVAVN 251
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLF 455
APGG GR +WT A ++L LF
Sbjct: 252 NLNILVLAPGGVPGRLTLWTAPAVEKLRGLF 282
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 101 bits (241), Expect = 2e-20
Identities = 44/151 (29%), Positives = 83/151 (54%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++N ++R + LV+ RGH V ++ ++P V+ D+++ + TK+ +
Sbjct: 104 KINKKERTLAIRSAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKD 163
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ D+++ K +++++GKGK+R R+ KGPL++ D+G++ RN G+++
Sbjct: 164 LGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDRGISLGARNHAGVDVVEVN 223
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLF 455
APG H GR I+TKSA ++L LF
Sbjct: 224 NINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 97.9 bits (233), Expect = 2e-19
Identities = 51/150 (34%), Positives = 83/150 (55%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++N QR+ S + +++ +RG+ V+ IPE+P V+ D +++I KT+ + L
Sbjct: 109 KINKNQRKSAIFSAIASSSIVSIIVSRGYRVKTIPEIPFVIEDSIEKIPKTRDLIKILTT 168
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ S V K ++L++GKGKMRNRR + GPL+++ K ++ RNI I+
Sbjct: 169 LGINSIVRNKLK-RKLKSGKGKMRNRRFKKPTGPLLVF---KNNLKSLRNIANIDCMKIS 224
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPL 452
APGGHLGR IW+ AF L+ +
Sbjct: 225 ALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 94.3 bits (224), Expect = 2e-18
Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Frame = +3
Query: 9 NLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIK 188
N++++R + A V+ARGH+ + P+VV+D + + T + FL++I
Sbjct: 112 NVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIG 171
Query: 189 AWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLII-YNKDKGLTRAFRNIPGIEMXXXXX 365
+ DV +V + R+RAGKGKMR R+ + GPLII ++ + + +A RN+ G+++
Sbjct: 172 VYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKD 231
Query: 366 XXXXXXAPGGHLGRFIIWTKSAFDRLD 446
APG H GR I+T+S+ LD
Sbjct: 232 VSVIHLAPGAHPGRLTIYTESSIKILD 258
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 93.5 bits (222), Expect = 3e-18
Identities = 49/147 (33%), Positives = 81/147 (55%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++N R+R+ + V+ RGH ++ +LP+VV D V+ INKTK A+ L+
Sbjct: 105 KINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKN 164
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ + D+ + + + +RAG+GKMR RR Q K LI+ + +AFR++PG+++
Sbjct: 165 LGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNSSAM-KAFRSLPGVDIASPN 223
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRL 443
APGG GR I+T+ A + L
Sbjct: 224 SLSIRKLAPGGVGGRLTIFTEGAIESL 250
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 88.2 bits (209), Expect = 1e-16
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++NL+++R + LV +RGH VE +PELPLV+ D ++ + KT+ AV L
Sbjct: 113 KINLKEKRLALAVSVAATASVPLVMSRGHRVESVPELPLVLDDTMETLTKTRDAVELLNS 172
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD--KGLTRAFRNIPGIEMXX 356
+ ++ +V ++R + KGK R GPL++ +G RAFRNIPG+++
Sbjct: 173 MGLADELKRVSVTKRTKR-KGKKR------PVGPLVVMRSTAVEG-KRAFRNIPGVDVMS 224
Query: 357 XXXXXXXXXAPGGHLGRFIIWTKSAFDRLD 446
AP G LGR +I++KSAF+ LD
Sbjct: 225 VEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 87.4 bits (207), Expect = 2e-16
Identities = 36/60 (60%), Positives = 51/60 (85%)
Frame = +3
Query: 78 ARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRN 257
++GH + ++PELPLVV DKV+ KT++AV+ L+++KAW+D+ KVY SQR+RAGKGKMRN
Sbjct: 2 SKGHRIGEVPELPLVVEDKVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
Score = 66.5 bits (155), Expect = 5e-10
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = +3
Query: 429 AFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVR 596
AF +LD L+G+W ++ K +NLP KM NTDLSR+LKS EI++ L+AP K++ R
Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALQAPRKKIHR 150
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 87.4 bits (207), Expect = 2e-16
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 1/148 (0%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++N ++RR + LV+ARGHI++K +P+VV D ++++ KTK+ L +
Sbjct: 118 KINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVV-DGLEQLRKTKEIQQLLLK 174
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNK-DKGLTRAFRNIPGIEMXXX 359
+ ++ +VY+ +R RAGKGK R R ++RKGPLI+ N ++ L +A NIPG+++
Sbjct: 175 LGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEV 233
Query: 360 XXXXXXXXAPGGHLGRFIIWTKSAFDRL 443
APG GR +I +K A + L
Sbjct: 234 PNLNVELLAPGAKPGRLLIISKDALETL 261
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 70.1 bits (164), Expect = 4e-11
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
Frame = +3
Query: 6 VNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKV-QEINKTKQAVIFLRR 182
+N +++R + LV+ RGH LP+V+ V +I+ ++A L
Sbjct: 117 INKKEKRLATISAISATSREDLVRQRGHRFSA-ETLPIVLDSSVLAKISTAREARSLLES 175
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXX 359
+ + DVL+ + +R AGKGKMR RR K L + + L A + +PG+++
Sbjct: 176 VGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTP 235
Query: 360 XXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLF 455
APGGH GR I+T A L F
Sbjct: 236 TLLSVLHLAPGGHPGRLTIYTTEALKLLSRRF 267
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 69.3 bits (162), Expect = 6e-11
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEIN----------- 149
++N ++ R S LV RGH E P+++ V+
Sbjct: 142 KINSKENRIARDSAIAASASSNLVSERGHHFEASLRFPIIIDGYVESREGGDEKYDLESL 201
Query: 150 ----KTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLT 317
T++ V + + +D+ + + +RAGKG MR R+ K L++ ++ GL
Sbjct: 202 PLQYSTRKFVAMMEGLGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLA 261
Query: 318 RAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLD 446
+A RNIPG+++ APGG GR +WTK+A L+
Sbjct: 262 KAARNIPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304
>UniRef50_A0RVX5 Cluster: Ribosomal protein L4; n=2;
Thermoprotei|Rep: Ribosomal protein L4 - Cenarchaeum
symbiosum
Length = 271
Score = 65.3 bits (152), Expect = 1e-09
Identities = 36/147 (24%), Positives = 71/147 (48%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
++N ++++ + + V RGHI++ I ELP+V+SD ++ ++K + L
Sbjct: 110 KINKKEKKLALCSAIAATASKSTVAGRGHIIDGI-ELPIVISDDIESVSKASEVRKILSA 168
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
+ ++DV ++ + ++ R GK +R R + K L + D + RA PG+
Sbjct: 169 LGLFADVNRL-EGRKPRTGKSALRGRPKKIGKSILFVVGADGPVIRAVGGFPGVTARPAR 227
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRL 443
APG R +++K+A + L
Sbjct: 228 DLSVLDLAPGAEPARLTVYSKAAIESL 254
>UniRef50_P12735 Cluster: 50S ribosomal protein L4P; n=1; Haloarcula
marismortui|Rep: 50S ribosomal protein L4P - Haloarcula
marismortui (Halobacterium marismortui)
Length = 246
Score = 61.3 bits (142), Expect = 2e-08
Identities = 37/121 (30%), Positives = 67/121 (55%)
Frame = +3
Query: 69 LVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGK 248
LV RGH ++ E+P+VVSD +++ KT++ V L + +D+ + ++ +++AG+G
Sbjct: 123 LVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADET-KIKAGQGS 180
Query: 249 MRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKS 428
R R+ +R ++ D+ T A RN+ G ++ APGG GR ++T+S
Sbjct: 181 ARGRK-YRRPASILFVTSDEPSTAA-RNLAGADVATASEVNTEDLAPGGAPGRLTVFTES 238
Query: 429 A 431
A
Sbjct: 239 A 239
>UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_113, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 54 SGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLK 209
S V +LV ARGH +E + ELPLV+ D + ++KT + L+++ A DV K
Sbjct: 16 SAVLSLVMARGHRIESVLELPLVIGDSTKSVDKTSTTIDILKQVGACPDVEK 67
>UniRef50_Q8N2J0 Cluster: CDNA FLJ90562 fis, clone OVARC1001163;
n=2; Homo sapiens|Rep: CDNA FLJ90562 fis, clone
OVARC1001163 - Homo sapiens (Human)
Length = 265
Score = 35.9 bits (79), Expect = 0.74
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 308 GSDSCIPQHPWHRDAQREQAEPPEAGTRRPSRQVHHL--DQVRFR*A*PAVRLVEDTIER 481
G + HP D +REQA AG R P ++HHL D VR R PA+ L + R
Sbjct: 127 GHPGAVRGHPGGGDQRREQAGGWHAGRRLP--ELHHLRGDAVRLR--GPALCLPLPGVRR 182
Query: 482 EE-DFQPAPAEDGQH 523
EE +F P +H
Sbjct: 183 EEGEFTSPPGTHAEH 197
>UniRef50_UPI000049A0BB Cluster: hypothetical protein 6.t00033; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 6.t00033 - Entamoeba histolytica HM-1:IMSS
Length = 980
Score = 35.5 bits (78), Expect = 0.97
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +3
Query: 66 ALVQARGHIVEKIP-ELPLVVSDKVQE--INKTKQAVIFLRRIKAWSDVLKVYKSQR 227
A V A H+++KI EL V +++ ++ INK K AV L+RI+A ++ K+ KSQR
Sbjct: 212 ARVSAIKHMIKKIERELDQVENEEERKKLINKQKTAVTMLKRIEARVNIHKLRKSQR 268
>UniRef50_Q8X0L3 Cluster: Putative uncharacterized protein B11B23.120;
n=1; Neurospora crassa|Rep: Putative uncharacterized
protein B11B23.120 - Neurospora crassa
Length = 1146
Score = 35.5 bits (78), Expect = 0.97
Identities = 20/85 (23%), Positives = 36/85 (42%)
Frame = +2
Query: 329 QHPWHRDAQREQAEPPEAGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIEREEDFQPAPA 508
Q P + +++ P+A P +Q HH Q P + + +++ P
Sbjct: 967 QQPQQLAQSQMRSQTPQALAPAPPQQYHHQQQHHQ----PQGQQQHQQLHQQQQLHPGSQ 1022
Query: 509 EDGQHRPQPSAEVRRDPQGPARAQQ 583
+ Q +PQP +V+ P P + QQ
Sbjct: 1023 QHEQTQPQPQPQVQAQPPPPQQQQQ 1047
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 34.7 bits (76), Expect = 1.7
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 510 KMANTDLSRLLKSEEIRKVLRAPNKRV 590
KM N+DLSR+LK EI++ L+AP K +
Sbjct: 3 KMMNSDLSRILKIPEIQRALQAPCKEI 29
>UniRef50_Q4WN15 Cluster: Putative uncharacterized protein; n=2;
Trichocomaceae|Rep: Putative uncharacterized protein -
Aspergillus fumigatus (Sartorya fumigata)
Length = 505
Score = 34.3 bits (75), Expect = 2.3
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 395 PSRQVHHLDQVRFR*A*PAVRLVEDTIERE-EDFQPAPAEDGQHRPQPSAEVRRDPQGPA 571
P +++ R A P V L T E E E P PA DG + QP+ R+ P+
Sbjct: 386 PRYHIYNQGIKRLEMALPNVCLFVHTHESENEQPDPVPASDGDGKRQPTRHSRKTPRRSV 445
Query: 572 RAQQA 586
AQQA
Sbjct: 446 LAQQA 450
>UniRef50_Q3LWC7 Cluster: Ribosomal protein L4A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L4A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 278
Score = 33.9 bits (74), Expect = 3.0
Identities = 23/94 (24%), Positives = 44/94 (46%)
Frame = +3
Query: 69 LVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGK 248
LV +RGH ++ + P+++ ++ I + ++ L+ +SD K S A + K
Sbjct: 137 LVVSRGHSLKDVKNFPMIIDSILKYIWHPSELLMLLKLYGGYSDFKKAMIS---HAKRKK 193
Query: 249 MRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEM 350
+ GPLII ++ L +N G+E+
Sbjct: 194 HLASSNTCKNGPLIIVDQVGDLFYLTQNTAGLEV 227
>UniRef50_Q5KM20 Cluster: Pre-mRNA-splicing factor CWC26; n=1;
Filobasidiella neoformans|Rep: Pre-mRNA-splicing factor
CWC26 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 331
Score = 33.9 bits (74), Expect = 3.0
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 449 AVRLVEDTIERE--EDFQPAPAEDGQHRPQPSAEVRRDPQG 565
A +L EDT ERE E P+PAE G+ RP P+ V RD G
Sbjct: 147 AAQLKEDT-ERELAEQRSPSPAE-GEERPDPTETVHRDATG 185
>UniRef50_UPI00005E1AE6 Cluster: putative non-structural protein
NS4/5; n=1; Aquareovirus A|Rep: putative non-structural
protein NS4/5 - Aquareovirus A
Length = 452
Score = 33.5 bits (73), Expect = 3.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 438 RLDPLFGSWKTPSNEKKTFNLPQPKMANTDLS 533
RLD L SW TP + ++ +P+P++ T LS
Sbjct: 72 RLDVLGDSWSTPKHSLRSHRVPEPRVRRTSLS 103
>UniRef50_Q3U4V6 Cluster: 2 days neonate thymus thymic cells cDNA,
RIKEN full-length enriched library, clone:E430025J06
product:hypothetical protein, full insert sequence; n=1;
Mus musculus|Rep: 2 days neonate thymus thymic cells
cDNA, RIKEN full-length enriched library,
clone:E430025J06 product:hypothetical protein, full
insert sequence - Mus musculus (Mouse)
Length = 242
Score = 33.5 bits (73), Expect = 3.9
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = +2
Query: 350 AQREQAEPP-EAGTRRPSRQVHHLDQVRFR*---A*PAVRLVEDTIEREEDFQPAPAEDG 517
A+R Q P A RR +R VH R R P R + F+PA
Sbjct: 80 ARRSQGSPSLRAAPRRSTRPVHS-SSARGRDPGGVRPRARAARGSTSSPRKFRPAVPRYF 138
Query: 518 QHRPQPSAEVRRDPQGPARAQQAC 589
PQP RR P+ P AQQ C
Sbjct: 139 PP-PQPRPPARRPPRNPRTAQQVC 161
>UniRef50_A1WV40 Cluster: Putative uncharacterized protein; n=1;
Halorhodospira halophila SL1|Rep: Putative
uncharacterized protein - Halorhodospira halophila
(strain DSM 244 / SL1) (Ectothiorhodospirahalophila
(strain DSM 244 / SL1))
Length = 554
Score = 33.1 bits (72), Expect = 5.2
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 435 DRLDPLFGSWKTP--SNEKKTFNLPQPKMANTDLSRLLKSEEIRKVL 569
D L+ L+G W+TP S +KKT+ NT S ++ +IRK+L
Sbjct: 157 DFLEALYGDWRTPLKSADKKTYFSGTAYRKNTHSSPSARTAQIRKLL 203
>UniRef50_Q7QSZ2 Cluster: GLP_384_18902_20299; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_384_18902_20299 - Giardia lamblia
ATCC 50803
Length = 465
Score = 32.7 bits (71), Expect = 6.9
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +2
Query: 341 HRDAQREQAEPPEAGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIEREEDFQPAPAEDGQ 520
H RE+AE + ++ +Q + + + P VR +D R E+ QP
Sbjct: 184 HELESRERAEAEQWKQKQQQQQQQQQSAISPQKSPPKVRFADDDKTRVEEHQPVIERPHF 243
Query: 521 HRPQPSAEVRR 553
+RP PS RR
Sbjct: 244 NRPPPSQHSRR 254
>UniRef50_Q4QFI9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 930
Score = 32.7 bits (71), Expect = 6.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 338 WHRDAQREQAEPPEAGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIERE--EDFQPAPAE 511
W R +QRE+ P E P +Q +L++ + E +E E E+ QP AE
Sbjct: 622 WQR-SQREEQRPDEEEEEAPEQQ-EYLEEAQSEKELQEDAEQEPQLEPEVEEELQPEEAE 679
Query: 512 DGQHRPQPSAEVRRDPQ 562
D +H+ + + E +P+
Sbjct: 680 DAEHQVEEALEEVSEPE 696
>UniRef50_UPI0000F2E94D Cluster: PREDICTED: hypothetical protein; n=1;
Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 1312
Score = 32.3 bits (70), Expect = 9.1
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 350 AQREQAEPPEAGTRRPSRQVHHLDQVRFR*-A*PAVRLVEDTIEREEDFQPAPAEDGQHR 526
AQ E+ P E R PS + + R R A P+ R D + D +P G H
Sbjct: 1115 AQLEEG-PQEGARRAPSETISFRPEARTRSLAAPSARGARDP--QPSDGRPCK---GAHG 1168
Query: 527 PQPSAEVRRDPQGPARAQQA 586
Q + RDPQ PA A +A
Sbjct: 1169 AQTAGRAGRDPQSPAPASRA 1188
>UniRef50_Q3WEH4 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 141
Score = 32.3 bits (70), Expect = 9.1
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 497 PAPAEDGQHRPQPSAEVRRDPQGPARA 577
PA A D RPQPSA RR+P G R+
Sbjct: 95 PASASDESGRPQPSAGPRREPGGGIRS 121
>UniRef50_A1B7L8 Cluster: Putative uncharacterized protein
precursor; n=1; Paracoccus denitrificans PD1222|Rep:
Putative uncharacterized protein precursor - Paracoccus
denitrificans (strain Pd 1222)
Length = 158
Score = 32.3 bits (70), Expect = 9.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 515 GQHRPQPSAEVRRDPQGPARA 577
G+HRP PSAE RRD P +A
Sbjct: 58 GEHRPPPSAEARRDGHKPRQA 78
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,214,579
Number of Sequences: 1657284
Number of extensions: 10138161
Number of successful extensions: 41578
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 37696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41231
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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