Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N16
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 218 6e-58
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 218 6e-58
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 4.9
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 6.4
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 8.5
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 218 bits (532), Expect = 6e-58
Identities = 102/200 (51%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
+VN ++R SGVP+L+ ARGH +E+IPE+PLVV D VQ KTK+AV L+
Sbjct: 114 KVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKE 173
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
IKA+ DV+KV S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFRNIPG+E+
Sbjct: 174 IKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVR 233
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLL 542
APGGHLGRF+IWTKSAF LD +FGS + KK + LP+ ++N D++RL+
Sbjct: 234 RLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLI 293
Query: 543 KSEEIRKVLRAPN-KRVVRA 599
S+EI+ +++A RV RA
Sbjct: 294 NSDEIQSIVKAAGPSRVKRA 313
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 218 bits (532), Expect = 6e-58
Identities = 102/200 (51%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
+VN ++R SGVP+L+ ARGH +E+IPE+PLVV D VQ KTK+AV L+
Sbjct: 114 KVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKE 173
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
IKA+ DV+KV S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFRNIPG+E+
Sbjct: 174 IKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVR 233
Query: 363 XXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLL 542
APGGHLGRF+IWTKSAF LD +FGS + KK + LP+ ++N D++RL+
Sbjct: 234 RLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLI 293
Query: 543 KSEEIRKVLRAPN-KRVVRA 599
S+EI+ +++A RV RA
Sbjct: 294 NSDEIQSIVKAAGPSRVKRA 313
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 2.8
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = -3
Query: 566 DLADLFGLQQTAEVGVGHLRLGQVESLLLVRWCLPRAEQRVKPIESGLGPDDEPAEMAAG 387
D D+ G +Q +V + H++ L+ R + + I + +E A +AA
Sbjct: 465 DRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADI---MNVCNEGALIAAR 521
Query: 386 CQLQEVQLVHVEHLDARDVAECTSQTLVLIIDDKGSFA 273
EVQ+VH E R A ++ VL ++K + A
Sbjct: 522 SNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVA 559
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 465 KTPSNEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 581
KTPS EK+ P P + N D L +E V + P+
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS 624
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 471 PSNEKKTFNLPQPKMANTDLSRLLKSEEI 557
PS K ++P PKM +TD L SE +
Sbjct: 251 PSQPKNAVSVPIPKMDSTDSKGELPSESL 279
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 444 DPLFGSWKTPSNEKKTFNLPQPKMANTDLSRL----LKSEEIRKVLRAPN 581
+PLF + KT S ++ L +PK N L RL + SEEI L PN
Sbjct: 971 EPLFVTVKTASTDESRSVLIKPKADNVILFRLKRFIMSSEEIN--LDIPN 1018
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 423 KSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 581
K F++L +F K+ S+EKK FN Q + N+ L+ + + + PN
Sbjct: 108 KVEFEKLGLVFKDAKS-SSEKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPN 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,487
Number of Sequences: 5004
Number of extensions: 36782
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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