Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N16
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 208 2e-54
07_01_0578 + 4295386-4296489,4297394-4297507 206 1e-53
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 31 0.53
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 31 0.70
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 29 2.1
12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403 29 2.8
07_03_0394 - 17633753-17636788 28 6.5
06_02_0097 + 11710560-11710859,11712605-11713270 28 6.5
04_03_0053 - 10286076-10286516,10286560-10287586,10287756-102880... 28 6.5
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 8.7
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863... 27 8.7
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 27 8.7
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 8.7
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 27 8.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 208 bits (509), Expect = 2e-54
Identities = 97/197 (49%), Positives = 135/197 (68%), Gaps = 1/197 (0%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
RVN+R RR + VP+LV ARGH +E +PE PLVVSD ++ I KT Q++ L++
Sbjct: 117 RVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQ 176
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRAFRNIPGIEMXXX 359
I A++D K S +RAGKGKMRNRR + RKGPLI+Y + + +AFRN+PG+++
Sbjct: 177 IGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANV 236
Query: 360 XXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRL 539
APGGHLGRF+IWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DLSRL
Sbjct: 237 ERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRL 296
Query: 540 LKSEEIRKVLRAPNKRV 590
+ S+E++ V++ NK V
Sbjct: 297 INSDEVQSVVKPINKEV 313
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 206 bits (502), Expect = 1e-53
Identities = 94/199 (47%), Positives = 135/199 (67%), Gaps = 1/199 (0%)
Frame = +3
Query: 3 RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
RVN+ RR + VP+LV ARGH +E +PELPLV+SD + I KT QA+ L++
Sbjct: 118 RVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQ 177
Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXX 359
+ A++D K S +R GKGKMRNRR + RKGPLI+Y + + +AFRN+PG+++
Sbjct: 178 VGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANV 237
Query: 360 XXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRL 539
APGGHLGRF+IWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R+
Sbjct: 238 ERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRI 297
Query: 540 LKSEEIRKVLRAPNKRVVR 596
+ S+E++ V++ NK V R
Sbjct: 298 INSDEVQSVVKPLNKEVKR 316
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 446 PAVRLVEDTIEREEDFQPAPAEDGQHRPQPSAEVRRDPQGPA 571
P++ D E EED A AE R PSA +R P P+
Sbjct: 45 PSIEQALDEEETEEDVDQAAAEASDTRKTPSASPKRTPPTPS 86
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 384 APG--GHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANT 524
APG G GR+++ SA + LDP F SW S E K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 502 PSRRWPTPTSAVC*SPKRSARSCARPTSVXLE 597
PSRRWP P A S + A + A PTS L+
Sbjct: 38 PSRRWPPPLRASA-SGRGGASAAAAPTSSALD 68
>12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 362 QAEPPEAGT-RRPSRQVHHLDQVRFR*A*PAVRLVEDTIEREEDFQPAPAEDGQHRPQPS 538
+A EAGT ++ R V QVR R + A + D E EED + EDG H PS
Sbjct: 38 RAGDDEAGTSKKRKRAVAKGGQVRTRRSAKAA-VESDGEEEEEDAEAGSEEDGSHGYTPS 96
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 464 EDTIEREEDFQPAPAEDGQHRPQPSAEVRRDPQGPARAQQ 583
E ++ FQ P E QHRPQP P+ QQ
Sbjct: 168 ETRADQVRQFQHLPKEQHQHRPQPMTAQPYYPESSYGQQQ 207
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 446 PAVRLVEDTIEREEDFQPAPAEDGQHRPQPSAEVRRDPQGPARAQQA 586
P V D +R+ D PA AED R + SA R+P P +A
Sbjct: 13 PPVATARD--KRKRDDGPADAEDEPPRARGSAVAGREPAAPGAEAEA 57
>04_03_0053 -
10286076-10286516,10286560-10287586,10287756-10288096,
10288198-10288248
Length = 619
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 446 PAVRLVEDTIEREEDFQPAPAEDGQHRPQPSAEVRRDPQGPA 571
P++ D E EED A AE PSA +R P P+
Sbjct: 566 PSIEQALDKEEIEEDVDQAAAEVSDIEKTPSASPKRTPPTPS 607
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 10 TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 102
TYG +L P+PPP P PS+ EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305
>09_02_0406 -
8629287-8629304,8629384-8629865,8629977-8630291,
8630381-8630576
Length = 336
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 362 QAEPPEAGT-RRPSRQVHHLDQVRFR*A*PAVRLVEDTIEREEDFQPAPAEDGQHRPQPS 538
+A EAGT ++ R V QVR R + + E EED EDG +P
Sbjct: 116 RAGDDEAGTSKKRKRAVAKGSQVRTRRSVKTAVENDGEEEDEEDADAGSEEDGSRAAKPM 175
Query: 539 AEVRR 553
VRR
Sbjct: 176 MAVRR 180
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 497 PAPAEDGQHRPQPSAEVRRDPQGPARAQQ 583
PAP++DG P+PS D + P ++
Sbjct: 405 PAPSDDGSASPEPSEGESADEKNPEEEEE 433
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 34 WPPPWQRPGYRPSFRLEGILLRR 102
WPPP P P L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 93 VEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 206
V K+PE LV + K+Q + K R + A+S++L
Sbjct: 56 VTKVPETKLVANPKIQNVRDLKSLRRLSRSLLAFSNLL 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,926
Number of Sequences: 37544
Number of extensions: 304344
Number of successful extensions: 1248
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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