Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N16
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               153   8e-38
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_43310| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)             29   2.2  
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)                 29   2.9  
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   28   5.1  
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)                   28   6.7  
SB_26480| Best HMM Match : EGF (HMM E-Value=0)                         28   6.7  
SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  153 bits (372), Expect = 8e-38
 Identities = 70/135 (51%), Positives = 92/135 (68%)
 Frame = +3

Query: 3   RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
           +VN++QRR         S +PAL+ ARGH +EKI E+PLV+SD ++ + KT  AV  L+ 
Sbjct: 111 KVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKA 170

Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXX 362
           + A+ DV K   S+++RAGKGKMRNRR V RKGPLIIYN D+GL +AFRN+PG+E+    
Sbjct: 171 VNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVD 230

Query: 363 XXXXXXXAPGGHLGR 407
                   PGGHLGR
Sbjct: 231 RLNLLKLCPGGHLGR 245


>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 350 AQREQAEPPEAGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIERE-EDFQPAPAEDGQHR 526
           A +E+AEP +  T  P        +++   + P     E T   + E  +P PAE+   +
Sbjct: 506 AAKEEAEPEQMDTSEPEPAKEPSSEIKPEASKPETAKPEATSPTDGEPAKPEPAEESSAK 565

Query: 527 PQPSAEVRRD 556
           P   AE+  +
Sbjct: 566 PSEEAEIMEE 575


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 468 TPSNEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRAT 602
           TP+ +   F   + +++N D+SRL  SE    + ++ N RV++++
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSS 846


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +2

Query: 305  QGSDSCIPQHPWHRDAQREQAEPPE--AGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIE 478
            Q  ++C  + P  R AQ ++  PP   A  +RP+  +H  D      A P V   ED I 
Sbjct: 770  QLKEACKSRPP--RPAQPKRVPPPRPTARPKRPNTSIHSQDDGLVGSA-PQVNPSEDVI- 825

Query: 479  REEDFQPAPAEDGQ-HRPQPSAEVRR 553
              EDF P P +  +  RP P     R
Sbjct: 826  --EDFDPLPQKAPKPRRPPPPKRPER 849


>SB_43310| Best HMM Match : Ribosomal_S14 (HMM E-Value=3.3)
          Length = 68

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 491 FQPAPAEDGQHRPQPSAEVRRDPQGPARAQQAC 589
           F P P E  + RP+PS  +RR P+G     + C
Sbjct: 7   FDPRPRERARERPRPS-RLRRKPRGSLHYYRLC 38


>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
          Length = 857

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 482 LVRWCLPRAEQRVKPIESGLGPDDEPAEMAAGCQLQEVQLVHV 354
           LV+WCL +A+  +   ESG     + +EM  G  L+   ++HV
Sbjct: 21  LVQWCLEKAQPLLASAESGSTRHQQASEMFQG--LESHSVLHV 61


>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 108 ELPLVVSDKVQEINKTKQAVIF-LRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQ 272
           E+P+ +S  + ++ K KQ ++  +R+    S V+  YK  R   G  K  + + +Q
Sbjct: 284 EMPINLSS-ISDVQKKKQKILSDIRQPNLHSSVIAQYKDYRKHCGNEKCSSNQNIQ 338


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 467 LPRAEQRVKPIESGLGPDDEPAEMAAGCQLQEVQLVHVEHLD 342
           LP    +V P+ES L   D P + +   +LQ   +V + HLD
Sbjct: 407 LPSGAPQVSPVESFLRYLDLPEDESEFVELQYAAVVLISHLD 448


>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
          Length = 1074

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 31  PWPPPWQRPGYRPSFR 78
           PWP P + PG RP +R
Sbjct: 480 PWPRPGRTPGRRPGYR 495


>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1772

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 484 FSFDGVFHEPNSGSSLSKADLVQMMNLPRWPPG 386
           F F+G  +EP+    L K+  +Q+M LP  PPG
Sbjct: 529 FFFNGDCNEPDVQQQL-KSSFLQLMGLPFIPPG 560


>SB_55826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 341 HRDAQREQAEPPEAGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIEREEDFQ 496
           HRD  R +  PP +  R PS +    +  R     PA R  +  ++RE D +
Sbjct: 134 HRDGHRSRGRPPLSHNRHPSDKKTARESSRGTLRTPA-RTRDQHVDRENDME 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,237
Number of Sequences: 59808
Number of extensions: 313408
Number of successful extensions: 954
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)