Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_N16
(604 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 221 4e-58
U64603-4|AAO61442.1| 410|Caenorhabditis elegans Serotonin/octop... 31 0.63
U64603-3|AAM15552.1| 422|Caenorhabditis elegans Serotonin/octop... 31 0.63
U64603-2|AAB04582.3| 435|Caenorhabditis elegans Serotonin/octop... 31 0.63
U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like pr... 29 1.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 29 2.6
Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical pr... 27 7.8
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 7.8
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 221 bits (539), Expect = 4e-58
Identities = 100/197 (50%), Positives = 141/197 (71%), Gaps = 1/197 (0%)
Frame = +3
Query: 6 VNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRI 185
VN+ Q+R SG+PAL+QARGH+++++ E+PLVVSDKV+ KTK+AV+FLRR
Sbjct: 114 VNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRS 173
Query: 186 KAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIEMXXXXX 365
W+D+ KVY S+R RAGKGK+RNR+ Q+ GP++IY +D RAFRNIPG+++
Sbjct: 174 HLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVER 233
Query: 366 XXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNE-KKTFNLPQPKMANTDLSRLL 542
APGGHLGR IIWT+SAF +LD ++G+ S++ KK +++P P MAN+D SR++
Sbjct: 234 LNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRII 293
Query: 543 KSEEIRKVLRAPNKRVV 593
+SEE+ K +RAP K V
Sbjct: 294 RSEEVVKAIRAPKKNPV 310
>U64603-4|AAO61442.1| 410|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 7, isoform c
protein.
Length = 410
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 447 PLFGSWKTPS--NEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 581
P GS +T NEK+T ++P+ + AN+ SRL K E RK L P+
Sbjct: 252 PRNGSAETKDFLNEKETIDVPKKERANSTNSRLFKLE--RKYLHRPS 296
>U64603-3|AAM15552.1| 422|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 7, isoform b
protein.
Length = 422
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 447 PLFGSWKTPS--NEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 581
P GS +T NEK+T ++P+ + AN+ SRL K E RK L P+
Sbjct: 252 PRNGSAETKDFLNEKETIDVPKKERANSTNSRLFKLE--RKYLHRPS 296
>U64603-2|AAB04582.3| 435|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 7, isoform a
protein.
Length = 435
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 447 PLFGSWKTPS--NEKKTFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 581
P GS +T NEK+T ++P+ + AN+ SRL K E RK L P+
Sbjct: 252 PRNGSAETKDFLNEKETIDVPKKERANSTNSRLFKLE--RKYLHRPS 296
>U41528-3|AAK39170.2| 594|Caenorhabditis elegans Kinesin-like
protein protein 8 protein.
Length = 594
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 81 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 260
R + EK+ +L +S + +EIN K+ V RIK D L++ KS+R + +R R
Sbjct: 353 RSDVEEKLDKLKDDISSREREINAQKEEV---NRIK---DSLRLEKSKRNELEEEVLRQR 406
Query: 261 RRVQRK 278
R Q +
Sbjct: 407 RCAQEE 412
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 335 PWHRDAQREQAEPPEAGTRRPSRQ 406
PW+ EPP G+RRPS+Q
Sbjct: 802 PWYSRDPIVNPEPPSVGSRRPSKQ 825
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 452 VRLVEDTIEREEDFQPAPAEDGQHRPQPSAEVRRDPQ 562
+RL+ ++ER +D A + +H+P P+A+ +P+
Sbjct: 394 IRLLVQSLERNQDIIIAHNDPNKHKPSPNAKFDVNPE 430
>Z48717-1|CAA88603.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.1 protein.
Length = 520
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -3
Query: 578 GRAQDLADLFGLQQTAEVGVGHLRLGQVESLLLVRWCLPRAEQRVK 441
G+A DL D + + T ++ +G + +GQ ESL+ LP+ ++ K
Sbjct: 166 GKAVDLLDYYQ-EFTLDI-IGRIAMGQTESLMFRNPMLPKVKEIFK 209
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 464 EDTIEREEDFQPAPAEDGQHRPQP-SAEVRRDPQGPAR 574
+D +E+ E+F+P+ D P P ++R PQ P +
Sbjct: 98 KDPVEKTENFEPSVTMDTYDFPDPYPVQIRARPQVPPK 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,762,987
Number of Sequences: 27780
Number of extensions: 228623
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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