Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N16
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   200   8e-52
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   195   2e-50
At5g17910.1 68418.m02100 expressed protein                             29   1.8  
At3g58530.1 68416.m06524 F-box family protein-related contains w...    27   7.2  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   7.2  
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M...    27   7.2  
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr...    27   9.6  
At1g75400.1 68414.m08759 expressed protein                             27   9.6  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  200 bits (487), Expect = 8e-52
 Identities = 92/200 (46%), Positives = 131/200 (65%), Gaps = 1/200 (0%)
 Frame = +3

Query: 3   RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
           RVN+  +R         + VPALV ARGH +E +PE+PLVVSD  + + KT  A+  L++
Sbjct: 119 RVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQ 178

Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXX 359
           I A+ D  K   S  +R GKGKMRNRR + RKGPL++Y  +   + +AFRN+PG+E+   
Sbjct: 179 IGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHV 238

Query: 360 XXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRL 539
                   APGGHLGRF+IWTKSAF++L+ ++GS++ PS +KK + LP+ KM N DL+R+
Sbjct: 239 ERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARI 298

Query: 540 LKSEEIRKVLRAPNKRVVRA 599
           + S+EI+ V+    K   RA
Sbjct: 299 INSDEIQSVVNPIKKDAKRA 318


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  195 bits (476), Expect = 2e-50
 Identities = 87/190 (45%), Positives = 128/190 (67%), Gaps = 1/190 (0%)
 Frame = +3

Query: 3   RVNLRQRRXXXXXXXXXSGVPALVQARGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRR 182
           RVN+  +R         + VPALV ARGH +E +PE+PLVVSD  + + KT  A+  L++
Sbjct: 120 RVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQ 179

Query: 183 IKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAFRNIPGIEMXXX 359
           I A+ D  K   S  +R GKGKMRNRR + RKGPL+++  +   + +AFRN+PG+E+   
Sbjct: 180 IGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHV 239

Query: 360 XXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMANTDLSRL 539
                   APGGHLGRF+IWTKSAF++L+ ++GS++ PS +KK + LP+ KM N DL+R+
Sbjct: 240 ERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARI 299

Query: 540 LKSEEIRKVL 569
           + S+E++ V+
Sbjct: 300 INSDEVQSVV 309


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 463 HEPNSGSSLSKADLVQMMNLPRWPPGASFRRFSLFTLSISMPGMLRNARVRPLSLL 296
           +EPN      K D  Q     + P    FRR   F++  SM G  R+ R+RP  +L
Sbjct: 454 YEPNEEKPDLKGDGFQEEFSSQQPKDPMFRRHESFSVGPSMLGGPRHDRLRPFFVL 509


>At3g58530.1 68416.m06524 F-box family protein-related contains weak
           similarity to F-box protein FBL2 (GI:6010699) [Rattus
           norvegicus]
          Length = 353

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 557 DLFGLQQTAEVGVGHL-RLGQVESLLLVRWCLPRAEQRVKPI 435
           D+ G Q  ++ G+GH+ +  ++ESL L  WC+   +  V  I
Sbjct: 246 DICGAQNISDEGIGHIAKCNKLESLNLT-WCVRITDAGVNTI 286


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/78 (29%), Positives = 31/78 (39%)
 Frame = +2

Query: 353 QREQAEPPEAGTRRPSRQVHHLDQVRFR*A*PAVRLVEDTIEREEDFQPAPAEDGQHRPQ 532
           +R    PP    R PS         R   + PA R    T    +   P+P    +HR  
Sbjct: 309 RRRSPSPPARRRRSPSPPARR----RRSPSPPARRHRSPTPPARQRRSPSPPAR-RHRSP 363

Query: 533 PSAEVRRDPQGPARAQQA 586
           P A  RR P  PAR +++
Sbjct: 364 PPARRRRSPSPPARRRRS 381


>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 442

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 228 LRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPGIE 347
           L+ G  K R+R  VQ +G + +Y+K  G    FR+   ++
Sbjct: 364 LQTGLRKRRSRGAVQVEGGIRLYSKQVGSPAGFRDFGDVD 403


>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
           protein similar to the myc family of helix-loop-helix
           transcription factors; contains Pfam profile PF00010:
           Helix-loop-helix DNA-binding domain; PMID: 12679534
          Length = 423

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 411 IIWTKSAFDRLDPLFGSWKTPSNEKKTFNLPQPKMAN 521
           II  ++  +R+  +FGS KT  +  +T + P+P +++
Sbjct: 175 IIQNRNFINRVKSIFGSGKTTKHTNQTGSYPKPAVSD 211


>At1g75400.1 68414.m08759 expressed protein
          Length = 455

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -1

Query: 457 PNSGSSLSKADLVQMMNL 404
           P+SGSSL+ +DL+++ NL
Sbjct: 110 PSSGSSLASSDLIEVKNL 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,768
Number of Sequences: 28952
Number of extensions: 215934
Number of successful extensions: 690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)