Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_N14
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    79   5e-16
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    28   0.93 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.1  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    27   2.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   3.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.0  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   6.5  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.7  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   8.7  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
 Frame = +2

Query: 11  MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXX 190
           M+LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I       
Sbjct: 1   MSLSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMK 60

Query: 191 XXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLI 370
                    I  SN+LN++RL++L  ++  + ++     K+L  + +    Y+  +  LI
Sbjct: 61  LKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLI 120

Query: 371 VQALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTKIKK-DTQLKVDTESFLSPDTCG 547
           VQA+  L EP   +  RQ D   V++ + +A +  K+K    D +L  +T+ FL+    G
Sbjct: 121 VQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLG 180


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 527 GSSRCLPSTVCPS*SLSCNPVEL*QGSTLLVTCPLDGR 414
           G    L S +CP  SLS  P+ L    TL +  PLD R
Sbjct: 423 GIPAILISAICPH-SLSFRPIILPDSMTLRIVVPLDAR 459


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 608 TGFQSVADLDASPSSNKVNSNHKCPETGSSRCLPSTVCPS*SLSCNPV 465
           + F ++ +    PSS+   +    P   +S  LPS+V  S SLS + V
Sbjct: 197 SSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSV 244


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 581 DASPSSNKVNSNHKCPETGSSRCLPSTV 498
           + +  S+ ++SN  CPE  S R LPS V
Sbjct: 119 ETNSKSSTLHSNPYCPEHHSIRTLPSAV 146


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 605 GFQSVADLDASPSSNKVNSNHKCPETGSSRCLPSTVCPS 489
           G   V ++ + PS+ +V S+H  P   +S   PSTV P+
Sbjct: 41  GHYPVNNMWSLPSNVRVISSHGAPGHQTSASQPSTVMPA 79


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 151 ATAAEDHGILREKRKTGGTPEKNSIIKHAEP 243
           A  + D+G+  +  KTG +P K S +   EP
Sbjct: 3   AHGSNDYGVSLKGNKTGSSPSKASSLNWNEP 33


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 602 FQSVAD--LDASPSSNKVNSNHKCPETGSS 519
           +QS  D  LD SPSSN  + NHK    G S
Sbjct: 122 WQSTNDTKLDNSPSSNYTDLNHKLANYGLS 151


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 602 FQSVAD--LDASPSSNKVNSNHKCPETGSS 519
           +QS  D  LD SPSSN  + NHK    G S
Sbjct: 122 WQSTNDTKLDNSPSSNYTDLNHKLANYGLS 151


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 160 PLLLHEAAFFNVELLLGLSIDFFSLFIGLLFDEGHHMLDLLLNICIAER 14
           P L+H     N E L  L ++FF  F G LFD  H +L +     +++R
Sbjct: 262 PDLVHGFGDKNEESLGILFVEFFRFF-GYLFDYEHFVLSIRHGTFLSKR 309


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 352 SSYNTHCTGSIPVNGAIGDHPRPSSGQVTSRVDPC*SSTGL 474
           SS +T  T ++P+NGA   +P  +S  +    DP   + G+
Sbjct: 62  SSPSTTGTVAVPINGANAVYPSTNSVSLPQSYDPWLDANGV 102


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 275 DHVRNVLDEARKRLAEVPKD 334
           D   N L+EA+KRLA +P D
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD 200


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 233 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 340
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 9   PWRSAMQMFKSRSSI*WPSSNKRPMKRLKKSMLRPRRS 122
           P  SAM  F    S+ +   N+R +K++K+++L P RS
Sbjct: 72  PRNSAMGNFMV--SVDFQDRNQRSLKQVKRTVLLPHRS 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,519
Number of Sequences: 5004
Number of extensions: 36159
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)